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Update release-4.0 #1108

Merged
merged 305 commits into from
Apr 11, 2023
Merged

Update release-4.0 #1108

merged 305 commits into from
Apr 11, 2023

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nfahlgren
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@nfahlgren nfahlgren commented Apr 10, 2023

Describe your changes
Merges changes in 4.x to the release-4.0 branch

Type of update
Is this a: update

For the reviewer
See this page for instructions on how to review the pull request.

  • PR functionality reviewed in a Jupyter Notebook
  • All tests pass
  • Test coverage remains 100%
  • Documentation tested
  • New documentation pages added to plantcv/mkdocs.yml
  • Changes to function input/output signatures added to updating.md
  • Code reviewed
  • PR approved

HaleySchuhl and others added 30 commits March 22, 2023 12:56
Changed debug from print to plot
PR template link was based on stable doc URL. Changed PR template link to latest branch.
updated to include pytest-cov install instruction.
Changed global debug behavior from print to plot
Changed debug perameter from print to plot
…ermal_values

Changed print to plot in analyze_thermal_values.md
Changed debug perameters from to plot
Changed debug perameters from print to plot
Update save_matrix.md to remove quotations surrounding filename
Changed debug perameters from print to plot
nfahlgren and others added 26 commits March 28, 2023 19:11
…r-format

Hsi read data flexible hdr format
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codecov bot commented Apr 10, 2023

Codecov Report

Merging #1108 (6fc4478) into release-4.0 (48f1de4) will increase coverage by 0.01%.
The diff coverage is 100.00%.

Impacted file tree graph

@@               Coverage Diff                @@
##           release-4.0     #1108      +/-   ##
================================================
+ Coverage        99.98%   100.00%   +0.01%     
================================================
  Files              161       161              
  Lines             6851      6875      +24     
================================================
+ Hits              6850      6875      +25     
+ Misses               1         0       -1     
Flag Coverage Δ
unittests 100.00% <100.00%> (+0.01%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
plantcv/plantcv/analyze_object.py 100.00% <ø> (+0.84%) ⬆️
plantcv/plantcv/fill_holes.py 100.00% <100.00%> (ø)
plantcv/plantcv/hyperspectral/read_data.py 100.00% <100.00%> (ø)
plantcv/plantcv/median_blur.py 100.00% <100.00%> (ø)
plantcv/plantcv/readimage.py 100.00% <100.00%> (ø)

@nfahlgren nfahlgren merged commit 89cfe7b into release-4.0 Apr 11, 2023
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@nfahlgren nfahlgren deleted the update-release4 branch April 11, 2023 00:23
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