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Coloring BAM reads by strand with mismatch highlights #72

Merged
merged 28 commits into from
Jul 18, 2014
Merged

Coloring BAM reads by strand with mismatch highlights #72

merged 28 commits into from
Jul 18, 2014

Commits on May 27, 2014

  1. Add option to show only mismatches.

    @pkaleta
    Piotr Kaleta authored and pkaleta committed May 27, 2014
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  2. Show dots instead of matches.

    @pkaleta
    Piotr Kaleta authored and pkaleta committed May 27, 2014
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  3. Distinguish between feature orientation.

    @pkaleta
    Piotr Kaleta authored and pkaleta committed May 27, 2014
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Commits on Jun 23, 2014

  1. color strands, change del to # char

    yifei committed Jun 23, 2014
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  2. changed drawing for svg export

    yifei committed Jun 23, 2014
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  3. change color scheme, show quality for non-ref bases

    yifei committed Jun 23, 2014
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Commits on Jun 24, 2014

  1. changed strand colors to match igv

    yifei committed Jun 24, 2014
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Commits on Jun 25, 2014

  1. Merge pull request dasmoth#1 from dev/color_strands_differently 

    Color strands differently for call review, show quality of nonref bases based on opacity.
    Yifei Men committed Jun 25, 2014
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Commits on Jul 2, 2014

  1. Bug fix for uncollapsing super groups

    yifei committed Jul 2, 2014
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Commits on Jul 3, 2014

  1. Merge pull request dasmoth#2 from dev/fix_uncollapsing_supergroup 

    Bug fix for uncollapsing super groups
    Yifei Men committed Jul 3, 2014
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Commits on Jul 7, 2014

  1. first pass at making read drawing faster

    yifei committed Jul 7, 2014
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Commits on Jul 8, 2014

  1. color change, retain ref qual at max zoom

    yifei committed Jul 8, 2014
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  2. add option to change strand color dynamically

    yifei committed Jul 8, 2014
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  3. consolidate SVG drawing and colors

    yifei committed Jul 8, 2014
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  4. change typo in colors

    yifei committed Jul 8, 2014
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Commits on Jul 9, 2014

  1. Merge branch 'master' into counsyl

    Matt Rasmussen committed Jul 9, 2014
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Commits on Jul 10, 2014

  1. change hardcoding for bases in drawing

    yifei committed Jul 10, 2014
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  2. merging master to branch after resolving conflicts

    yifei committed Jul 10, 2014
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  3. bug fix related to merge conflict

    yifei committed Jul 10, 2014
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Commits on Jul 11, 2014

  1. Merge branch 'opensource_master' into opensource_color_strands

    yifei committed Jul 11, 2014
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Commits on Jul 15, 2014

  1. Merge branch 'opensource_master' into opensource_color_strands

    yifei committed Jul 15, 2014
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Commits on Jul 16, 2014

  1. tighten tier edit options

    yifei committed Jul 16, 2014
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  2. Merge branch 'opensource_master' into opensource_color_strands 

    For update of branch
    yifei committed Jul 16, 2014
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  3. style cleanup

    yifei committed Jul 16, 2014
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  4. style cleanup

    yifei committed Jul 16, 2014
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  5. tighten color edit options

    yifei committed Jul 16, 2014
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Commits on Jul 17, 2014

  1. style cleanup

    yifei committed Jul 17, 2014
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  2. adjust args to SequenceGlyph constructor

    yifei committed Jul 17, 2014
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