An interactive Shiny web application for genomic interval enrichment analysis using the LOLA package.
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README.md

LOLAweb

LOLAweb is a web server and interactive results viewer for enrichment of overlap between a query region set (a bed file) and a database of region sets. It provides an interactive result explorer to visualize the highest ranked enrichments from the database. You can access the web server at http://lolaweb.databio.org.

This repository contains two components: 1) the shiny app source code and 2) Docker implementation for LOLAweb.

Shiny app

LOLAweb is implemented as an interactive Shiny app. You can run this app locally by following the instructions in the appfolder.

Docker

We have also produced a Dockerfile and published an image on Docker Hub (databio/lolaweb). Learn how to run LOLAweb locally in a docker container by reading the instructions in the docker folder.