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tutorials on how to use the lab's tools
A method for annotation of principal components by region set enrichment
Python toolkit for building restartable pipelines
Create a standardized format for reference genome files and indexes
A modular, containerized pipeline for ATAC-seq data processing
An interactive Shiny web application for genomic interval enrichment analysis using the LOLA package.
Generates a countTable from a PEP for DESeq analysis
Simplified R caching for reproducible big data projects
R package for calculating and plotting the distribution of genomic ranges across the genome.
Cleaner R workspaces
R project initialization
Chimeric transcript discovery
Manage distributed input and output data locations with folder functions
R package for Methylation-based Inference of Regulatory Activity
Base Docker image for Shiny-based web apps.
Calculating epigenetic heterogeneity
A shiny app to visualize gene expression data from clustered cells
Decoy alignment sequences
Small test data from various data types for testing pipelines
Parses bisulfite sequencing data