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Python toolkit for building restartable pipelines
Simplified R caching for reproducible big data projects
Chimeric transcript discovery
An interactive Shiny web application for genomic interval enrichment analysis using the LOLA package.
Create a standardized format for reference genome files and indexes
Manage distributed input and output data locations with folder functions
tutorials on how to use the lab's tools
Generates a countTable from a project annotation sheet for DESeq analysis
R package for calculating and plotting the distribution of genomic ranges across the genome.
Cleaner R workspaces
R package for Methylation-based Inference of Regulatory Activity
Base Docker image for Shiny-based web apps.
R project initialization
Calculating epigenetic heterogeneity
A shiny app to visualize gene expression data from clustered cells
Decoy alignment sequences
Small test data from various data types for testing pipelines
Parses bisulfite sequencing data