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1. pepatac pepatac Public

   A modular, containerized pipeline for ATAC-seq data processing

   Python 57 16

2. COCOA COCOA Public

   Annotating epigenetic variation among samples with region sets in R

   R 10

3. LOLAweb LOLAweb Public

   An interactive Shiny web application for genomic interval enrichment analysis using LOLA.

   R 16 2

4. awesome-atac-analysis awesome-atac-analysis Public

   Links to ATAC-seq analysis tools

   65 6

5. MIRA MIRA Public

   R package for Methylation-based Inference of Regulatory Activity

   R 13 2

6. pypiper pypiper Public

   Python toolkit for building restartable pipelines

   Python 45 9