@databio

Databio

Computational biology at UVA

Pinned repositories

  1. refgenie

    Create a standardized format for reference genome files and indexes

    Python 2 1

  2. simpleCache

    Quick R caching for reproducible big data projects

    R 15 3

  3. pypiper

    Python toolkit for building restartable pipelines

    Python 15 4

  4. MIRA

    R package for Methylation-based Inference of Regulatory Activity

    R 3 1

  • R project initialization

    R 1 Updated Jan 11, 2018
  • R 1 Updated Jan 6, 2018
  • Quick R caching for reproducible big data projects

    R 15 3 Updated Dec 20, 2017
  • Python toolkit for building restartable pipelines

    Python 15 4 Updated Dec 19, 2017
  • Python 1 Updated Dec 19, 2017
  • Python 1 1 Updated Dec 15, 2017
  • Allows pepr projects to be analyzed by DESeq in one step

    R Updated Dec 13, 2017
  • Python Updated Dec 5, 2017
  • A shiny app to visualize gene expression data from clustered cells

    R 1 Updated Nov 10, 2017
  • Jupyter Notebook 3 Updated Nov 9, 2017
  • R package for Methylation-based Inference of Regulatory Activity

    R 3 1 Updated Nov 3, 2017
  • Decoy alignment sequences

    Updated Nov 1, 2017
  • Small test data from various data types for testing pipelines

    Shell 2 Updated Oct 31, 2017
  • Python 2 Updated Oct 9, 2017
  • Parses bisulfite sequencing data

    R Updated Sep 5, 2017
  • Calculating epigenetic heterogeneity

    R 1 Updated Aug 31, 2017
  • Makefile Updated Aug 29, 2017
  • Create a standardized format for reference genome files and indexes

    Python 2 1 Updated Jun 9, 2017