@databio

Databio

Computational biology at UVA

Pinned repositories

  1. refgenie

    Create a standardized format for reference genome files and indexes

    Python 3 1

  2. simpleCache

    Simplified R caching for reproducible big data projects

    R 18 3

  3. pypiper

    Python toolkit for building restartable pipelines

    Python 18 5

  4. MIRA

    R package for Methylation-based Inference of Regulatory Activity

    R 3 2

  • Python toolkit for building restartable pipelines

    Python 18 5 Updated Jun 22, 2018
  • Python 4 1 Updated Jun 13, 2018
  • Simplified R caching for reproducible big data projects

    R 18 3 Updated Jun 8, 2018
  • Chimeric transcript discovery

    R GPL-3.0 Updated May 25, 2018
  • An interactive Shiny web application for genomic interval enrichment analysis using the LOLA package.

    R 3 Updated May 24, 2018
  • Makefile Updated May 23, 2018
  • Create a standardized format for reference genome files and indexes

    Python 3 1 Updated May 18, 2018
  • Manage distributed input and output data locations with folder functions

    R Updated May 17, 2018
  • Python Updated May 9, 2018
  • tutorials on how to use the lab's tools

    R Updated May 8, 2018
  • Generates a countTable from a project annotation sheet for DESeq analysis

    R Updated May 3, 2018
  • R package for calculating and plotting the distribution of genomic ranges across the genome.

    R 1 1 Updated Apr 30, 2018
  • Cleaner R workspaces

    R Updated Apr 25, 2018
  • Python 1 Updated Apr 24, 2018
  • R package for Methylation-based Inference of Regulatory Activity

    R 3 2 Updated Apr 20, 2018
  • Base Docker image for Shiny-based web apps.

    1 Updated Apr 10, 2018
  • R project initialization

    R 1 Updated Apr 6, 2018
  • Calculating epigenetic heterogeneity

    R 1 Updated Feb 26, 2018
  • Python Updated Dec 5, 2017
  • A shiny app to visualize gene expression data from clustered cells

    R 1 Updated Nov 10, 2017
  • Jupyter Notebook 4 Updated Nov 9, 2017
  • Decoy alignment sequences

    1 Updated Nov 1, 2017
  • Small test data from various data types for testing pipelines

    Shell 2 Updated Oct 31, 2017
  • Python 3 Updated Oct 9, 2017
  • Parses bisulfite sequencing data

    R Updated Sep 5, 2017
  • Python Updated Jan 27, 2017