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AddAncestry.R
AddAncestry.R
 
 
AlcoholIntake.txt
AlcoholIntake.txt
 
 
DepressionAssociation.20230913.R
DepressionAssociation.20230913.R
 
 
DoLastRecessiveAnalyses.20230823.R
DoLastRecessiveAnalyses.20230823.R
 
 
DoRecessiveAnalyses.20230215.R
DoRecessiveAnalyses.20230215.R
 
 
DoRecessiveAnalyses.20230315.R
DoRecessiveAnalyses.20230315.R
 
 
DoRecessiveAnalyses.20230802.R
DoRecessiveAnalyses.20230802.R
 
 
DoRecessiveAnalyses.BMI.20230118.R
DoRecessiveAnalyses.BMI.20230118.R
 
 
DoRecessiveAnalyses.BMI.20230123.R
DoRecessiveAnalyses.BMI.20230123.R
 
 
DownloadNeededFiles.sh
DownloadNeededFiles.sh
 
 
GETE3E4.470K.20240701.R
GETE3E4.470K.20240701.R
 
 
GetGeneRecessiveResults.20231220.R
GetGeneRecessiveResults.20231220.R
 
 
GetRecessiveVarCounts.20230731.R
GetRecessiveVarCounts.20230731.R
 
 
ICD10Sources.20230811.txt
ICD10Sources.20230811.txt
 
 
ICD10Sources.txt
ICD10Sources.txt
 
 
ICD9Sources.txt
ICD9Sources.txt
 
 
LOADDiagnosis.txt
LOADDiagnosis.txt
 
 
LOF.weights.txt
LOF.weights.txt
 
 
MAKEDEMSCORE.20240829.R
MAKEDEMSCORE.20240829.R
 
 
MakeRandomPhenotype.R
MakeRandomPhenotype.R
 
 
POLYPHENVarCountWeights.txt
POLYPHENVarCountWeights.txt
 
 
POLYPHENWEIGHTS.20201231.txt
POLYPHENWEIGHTS.20201231.txt
 
 
README
README
 
 
README.md
README.md
 
 
RedoQQPLots.20230727.R
RedoQQPLots.20230727.R
 
 
RunOnRap.sh
RunOnRap.sh
 
 
SIFTVarCountWeights.txt
SIFTVarCountWeights.txt
 
 
SIFTWEIGHTS.20201231.txt
SIFTWEIGHTS.20201231.txt
 
 
T2D.forAnnot.20231109.GCK.sh
T2D.forAnnot.20231109.GCK.sh
 
 
T2DDiagnosis.txt
T2DDiagnosis.txt
 
 
T2DDrugNames.txt
T2DDrugNames.txt
 
 
TxtToVcf.sh
TxtToVcf.sh
 
 
UKBB.BMI.all.parg
UKBB.BMI.all.parg
 
 
UKBB.PCs.and.HL.tst
UKBB.PCs.and.HL.tst
 
 
UKBB.all.parg
UKBB.all.parg
 
 
UKBB.coding4.tsv
UKBB.coding4.tsv
 
 
analyse.TCF7L2.20240808.R
analyse.TCF7L2.20240808.R
 
 
analyseADHVars.R
analyseADHVars.R
 
 
analyseAsthmaVariants.20230313.R
analyseAsthmaVariants.20230313.R
 
 
analyseAsthmaVariants.20230321.R
analyseAsthmaVariants.20230321.R
 
 
analyseSeparateVarCounts.20211019.R
analyseSeparateVarCounts.20211019.R
 
 
analyseSeparateVarCounts.20230331.R
analyseSeparateVarCounts.20230331.R
 
 
analyseSeparateVarCounts.20230827.R
analyseSeparateVarCounts.20230827.R
 
 
analyseVarTypes.20201210.R
analyseVarTypes.20201210.R
 
 
analyseVarTypes.20210128.R
analyseVarTypes.20210128.R
 
 
analyseVarTypes.20210923.R
analyseVarTypes.20210923.R
 
 
analyseVarTypes.quantitative.20210113.R
analyseVarTypes.quantitative.20210113.R
 
 
analyseVarTypes.quantitative.470K.20240703.R
analyseVarTypes.quantitative.470K.20240703.R
 
 
annotate.bims.sh
annotate.bims.sh
 
 
annotate.bims.with.AlphaMissense.sh
annotate.bims.with.AlphaMissense.sh
 
 
annotateVCF38.onechr.20210215.sh
annotateVCF38.onechr.20210215.sh
 
 
annotateVCF38.onechr.20210225.sh
annotateVCF38.onechr.20210225.sh
 
 
annotateVCF38.onechr.210102.sh
annotateVCF38.onechr.210102.sh
 
 
annotateVCF38.onechr.sh
annotateVCF38.onechr.sh
 
 
antihypertensives.txt
antihypertensives.txt
 
 
asthmaDiagnosis.txt
asthmaDiagnosis.txt
 
 
atopicDermatitisDiagnosis.txt
atopicDermatitisDiagnosis.txt
 
 
bipolarDiagnosis.txt
bipolarDiagnosis.txt
 
 
bipolarRx.txt
bipolarRx.txt
 
 
coding100006.tsv
coding100006.tsv
 
 
colNames.txt
colNames.txt
 
 
compareAnnotations.20210226.R
compareAnnotations.20210226.R
 
 
dementiaRx.txt
dementiaRx.txt
 
 
doMultiWeightAnalyses.20231109.R
doMultiWeightAnalyses.20231109.R
 
 
doMultiWeightAnalyses.20231113.R
doMultiWeightAnalyses.20231113.R
 
 
doMultiWeightAnalyses.R
doMultiWeightAnalyses.R
 
 
extract.UKBB.var.41465.20230807.sh
extract.UKBB.var.41465.20230807.sh
 
 
extract.UKBB.var.41465.20230913.sh
extract.UKBB.var.41465.20230913.sh
 
 
extract.UKBB.var.43357.20230807.sh
extract.UKBB.var.43357.20230807.sh
 
 
extract.UKBB.var.exomes.20201207.sh
extract.UKBB.var.exomes.20201207.sh
 
 
extract.UKBB.var.exomes.sh
extract.UKBB.var.exomes.sh
 
 
extract.UKBB.var.sh
extract.UKBB.var.sh
 
 
extractExomeData.470K.sh
extractExomeData.470K.sh
 
 
extractExomeData.sh
extractExomeData.sh
 
 
extractExtremeSubjects.20210602.sh
extractExtremeSubjects.20210602.sh
 
 
extractExtremeSubjects.20230814.sh
extractExtremeSubjects.20230814.sh
 
 
extractExtremeSubjects.sh
extractExtremeSubjects.sh
 
 
femaleMeds.txt
femaleMeds.txt
 
 
forAnnot.20231109.T2D.GCK.sh
forAnnot.20231109.T2D.GCK.sh
 
 
ftpCluster.sh
ftpCluster.sh
 
 
get.200Kexomes.PCs.sh
get.200Kexomes.PCs.sh
 
 
get.500Kexomes.PCs.20230806.sh
get.500Kexomes.PCs.20230806.sh
 
 
get.ns.scores.sh
get.ns.scores.sh
 
 
getAllSaos.20240815.sh
getAllSaos.20240815.sh
 
 
getAllScores.20230816.sh
getAllScores.20230816.sh
 
 
getAllScores.20230825.sh
getAllScores.20230825.sh
 
 
getAllScores.20231112.sh
getAllScores.20231112.sh
 
 
getAnnotCorrs.20231115.R
getAnnotCorrs.20231115.R
 
 
getAnnotCorrs.R
getAnnotCorrs.R
 
 
getBestSNPs.20240226.R
getBestSNPs.20240226.R
 
 
getClinicalSummary.20210602.R
getClinicalSummary.20210602.R
 
 
getClinicalSummary.20210617.R
getClinicalSummary.20210617.R
 
 
getClinicalSummary.20230814.R
getClinicalSummary.20230814.R
 
 
getClinicalSummary.R
getClinicalSummary.R
 
 
getCommonVars.20210829.sh
getCommonVars.20210829.sh
 
 
getCommonVars.20230806.sh
getCommonVars.20230806.sh
 
 
getFreqsByEthnicity.R
getFreqsByEthnicity.R
 
 
getLOFvars.sh
getLOFvars.sh
 
 
getMigraineAges.20211124.R
getMigraineAges.20211124.R
 
 
getOverallSummary.20210622.R
getOverallSummary.20210622.R
 
 

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UKBBscripts

Scripts and related files used to analyse UK Biobank data

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