A simple command-line tool to convert 23andMe raw data files to VCF format.
pip install 23andme-to-vcf
23andme-to-vcf --input in.txt --fasta GRCh37.fa --fai GRCh37.fa.fai --output out.vcf
Alternatively, run the public docker image davidwb/23andme-to-vcf which already contains the reference and fasta index:
docker run -v `pwd`:/app/data davidwb/23andme-to-vcf --input genome_David_Brown_v4_Full_20180518133503.txt --output david_23andme.vcf