Applied Predictive Modeling Notes

Working notes for the compute (general principles) and exercises (specific open ended tasks) sections of Kuhn & Johnson’s Applied Predictive Modeling text. Where practical, examples are converted to tidyverse versions.

This repository is a companion to an internal weekly bookclub on the topic. We’re going through a chapter a week.

Data Sets

data(package = c("AppliedPredictiveModeling", "mlbench", "caret") ) -> dat
as_tibble(dat$results) %>% select(-LibPath) %>% print(n = nrow(.))

## # A tibble: 63 x 3
##    Package                   Item                          Title          
##    <chr>                     <chr>                         <chr>          
##  1 AppliedPredictiveModeling ChemicalManufacturingProcess  Chemical Manuf…
##  2 AppliedPredictiveModeling abalone                       Abalone Data   
##  3 AppliedPredictiveModeling bio (hepatic)                 Hepatic Injury…
##  4 AppliedPredictiveModeling cars2010 (FuelEconomy)        Fuel Economy D…
##  5 AppliedPredictiveModeling cars2011 (FuelEconomy)        Fuel Economy D…
##  6 AppliedPredictiveModeling cars2012 (FuelEconomy)        Fuel Economy D…
##  7 AppliedPredictiveModeling chem (hepatic)                Hepatic Injury…
##  8 AppliedPredictiveModeling classes (twoClassData)        Two Class Exam…
##  9 AppliedPredictiveModeling concrete                      Compressive St…
## 10 AppliedPredictiveModeling diagnosis (AlzheimerDisease)  Alzheimer's Di…
## 11 AppliedPredictiveModeling fingerprints (permeability)   Permeability D…
## 12 AppliedPredictiveModeling injury (hepatic)              Hepatic Injury…
## 13 AppliedPredictiveModeling logisticCreditPredictions     Logistic Regre…
## 14 AppliedPredictiveModeling mixtures (concrete)           Compressive St…
## 15 AppliedPredictiveModeling permeability                  Permeability D…
## 16 AppliedPredictiveModeling predictors (AlzheimerDisease) Alzheimer's Di…
## 17 AppliedPredictiveModeling predictors (twoClassData)     Alzheimer's Di…
## 18 AppliedPredictiveModeling schedulingData                HPC Job Schedu…
## 19 AppliedPredictiveModeling segmentationOriginal          Cell Body Segm…
## 20 AppliedPredictiveModeling solTestX (solubility)         Solubility Data
## 21 AppliedPredictiveModeling solTestXtrans (solubility)    Solubility Data
## 22 AppliedPredictiveModeling solTestY (solubility)         Solubility Data
## 23 AppliedPredictiveModeling solTrainX (solubility)        Solubility Data
## 24 AppliedPredictiveModeling solTrainXtrans (solubility)   Solubility Data
## 25 AppliedPredictiveModeling solTrainY (solubility)        Solubility Data
## 26 mlbench                   BostonHousing                 Boston Housing…
## 27 mlbench                   BostonHousing2                Boston Housing…
## 28 mlbench                   BreastCancer                  Wisconsin Brea…
## 29 mlbench                   DNA                           Primate splice…
## 30 mlbench                   Glass                         Glass Identifi…
## 31 mlbench                   HouseVotes84                  United States …
## 32 mlbench                   Ionosphere                    Johns Hopkins …
## 33 mlbench                   LetterRecognition             Letter Image R…
## 34 mlbench                   Ozone                         Los Angeles oz…
## 35 mlbench                   PimaIndiansDiabetes           Pima Indians D…
## 36 mlbench                   PimaIndiansDiabetes2          Pima Indians D…
## 37 mlbench                   Satellite                     Landsat Multi-…
## 38 mlbench                   Servo                         Servo Data     
## 39 mlbench                   Shuttle                       Shuttle Datase…
## 40 mlbench                   Sonar                         Sonar, Mines v…
## 41 mlbench                   Soybean                       Soybean Databa…
## 42 mlbench                   Vehicle                       Vehicle Silhou…
## 43 mlbench                   Vowel                         Vowel Recognit…
## 44 mlbench                   Zoo                           Zoo Data       
## 45 caret                     GermanCredit                  German Credit …
## 46 caret                     Sacramento                    Sacramento CA …
## 47 caret                     absorp (tecator)              Fat, Water and…
## 48 caret                     bbbDescr (BloodBrain)         Blood Brain Ba…
## 49 caret                     cars                          Kelly Blue Boo…
## 50 caret                     cox2Class (cox2)              COX-2 Activity…
## 51 caret                     cox2Descr (cox2)              COX-2 Activity…
## 52 caret                     cox2IC50 (cox2)               COX-2 Activity…
## 53 caret                     dhfr                          Dihydrofolate …
## 54 caret                     endpoints (tecator)           Fat, Water and…
## 55 caret                     fattyAcids (oil)              Fatty acid com…
## 56 caret                     logBBB (BloodBrain)           Blood Brain Ba…
## 57 caret                     mdrrClass (mdrr)              Multidrug Resi…
## 58 caret                     mdrrDescr (mdrr)              Multidrug Resi…
## 59 caret                     oilType (oil)                 Fatty acid com…
## 60 caret                     potteryClass (pottery)        Pottery from P…
## 61 caret                     scat                          Morphometric D…
## 62 caret                     scat_orig (scat)              Morphometric D…
## 63 caret                     segmentationData              Cell Body Segm…