add a vignette

dcgerard · May 23, 2019 · ff7aea0 · ff7aea0
1 parent 891cfed
commit ff7aea0
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Showing 37 changed files with 1,115 additions and 26 deletions.
diff --git a/.gitignore b/.gitignore
@@ -40,4 +40,5 @@ _region_.tex
 *.rar
 *.tar
 *.zip
-*.egg-info
+*.egg-info
+inst/doc
diff --git a/.travis.yml b/.travis.yml
@@ -7,6 +7,9 @@ cache: packages
 bioc_packages: sva
 bioc_packages: SummarizedExperiment
 bioc_packages: DESeq2
+bioc_packages: airway
+bioc_packages: limma
+bioc_packages: qvalue
 
 after_success:
   - Rscript -e 'covr::codecov()'
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -20,11 +20,17 @@ Suggests:
     covr,
     testthat,
     SummarizedExperiment,
-    DESeq2
+    DESeq2,
+    knitr,
+    rmarkdown,
+    airway,
+    limma,
+    qvalue
 Imports: 
     assertthat,
     irlba,
     sva,
     pdist,
     optmatch,
     matchingR
+VignetteBuilder: knitr
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/index.html b/docs/articles/index.html