imputationserver-web-ui

Web interface to generate parameters config file for imputation workflow.

Workflow Available Imputation Algorithm.

Program	Version
conform-gt	24May16
Beagle 5.2	21Apr21.304
bcftools	1.9

More workflow detail is https://sc.ddbj.nig.ac.jp/advanced_guides/imputation_server

UI

Web site image is here

Input

The web user interface enables the users to specify these parameters graphically.

Mandatory parameters

There are 2 mandatory input parameters.

1. Target genotype dataset (VCF Format)
2. Reference panel dataset (Dataset containing phased haplotypes)

Optional parameters

There are 2 optional input parameters.

1. Number of threads (default value of 16)
2. The posterior probability of possible genotypes is included in the output file (default is false)

Result

• Generated config file
  • This is used as input parameters for imputation workflow

About the HIBAG workflow models

We obtained the HIBAG model files from https://hibag.s3.amazonaws.com/hlares_index.html on January 5, 2024.