Impossible to build dealii (Trilinos problem) on Macbook pro with M1Pro

[Francyrad]

Dear developers,

I was trying to install dealii as described in the guide for m1pro. However, I encounter an error during the installation as the Candi fails to install trilinos as it lacks support for arm64.

I report below the error, I hope you can help me solve the problem.

Thanks in advance
Francis

[ 70%] Linking CXX shared library libstratimikosamesos2.dylib
Undefined symbols for architecture arm64:
"Amesos2::TachoSolver<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::TachoSolver(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>)", referenced from:
Amesos2::create_solver_with_supported_type<Amesos2::TachoSolver, Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::apply(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>) in Thyra_Amesos2LinearOpWithSolveFactory.cpp.o
"Amesos2::KLU2<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::KLU2(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>)", referenced from:
Amesos2::create_solver_with_supported_type<Amesos2::KLU2, Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::apply(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>) in Thyra_Amesos2LinearOpWithSolveFactory.cpp.o
ld: symbol(s) not found for architecture arm64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [packages/stratimikos/adapters/amesos2/src/libstratimikosamesos2.13.2.dylib] Error 1
make[1]: *** [packages/stratimikos/adapters/amesos2/src/CMakeFiles/stratimikosamesos2.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 70%] Linking CXX shared library libstratimikosaztecoo.dylib
[ 70%] Built target stratimikosaztecoo
[ 70%] Linking CXX shared library libstratimikosbelos.dylib
Undefined symbols for architecture arm64:
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getNumVectors() const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDense(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseHeader(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseColumn(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getLocalLength() const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseColumn(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getGlobalLength() const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseHeader(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::get1dCopy(Teuchos::ArrayView const&, unsigned long) const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseColumn(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getVector(unsigned long) const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDense(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
ld: symbol(s) not found for architecture arm64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [packages/stratimikos/adapters/belos/src/libstratimikosbelos.13.2.dylib] Error 1
make[1]: *** [packages/stratimikos/adapters/belos/src/CMakeFiles/stratimikosbelos.dir/all] Error 2
make: *** [all] Error 2
Failure with exit status: 2
Exit message: There was a problem building trilinos 13-2-0.

[drwells]

I like the name dealinos.

How did you configure Trilinos? If you can, it would help if you could post this to the deal.II mailing list too - while there are a lot of "dealinos" users here there are more there.

[Francyrad]

Sorry for the wrong name, i just absorbed by confusion (lol).

I didn't configure anything honestly. I just followed the guide for M1, which doesn't say to install prerequisites except for clang, or i'm getting something wrong? I just installed hdf5 for other reasons, but i didn't installed trilnos or others...

If i have to install trillnos for arm64 prior to install dealii for M1, i'll find a way

[jpthiele]

Are you building Trilinos by hand with cmake or are you using a seperate build manager like candi?
If you are using cmake I can heartily recommend to use the OS-independent calls i.e.
cmake -S. -Bbuild
cmake --build build

This will tell cmake that the config Source dir ss . (current dir) and the Build dir is build

[Francyrad]

I'm using this:

git clone https://github.com/dealii/candi
cd candi
./candi.sh -j 8 --packages="hdf5 p4est trilinos dealii"

[jpthiele]

I am not sure whether candi actually supports ARM processors and it seems to me like it wants to use some linker flag that is not supported for arm64 but somehow set somewhere.
On the other hand there have been some problems with Trilinos major version 13, so it might be worth it to try and change that in the candi.cfg
So comment out TRILINOS_MAJOR_VERSION=AUTO
and comment in TRILINOS_MAJOR_VERSION=12
should be lines 102 and 103
Otherwise @tjhei might have an overview of supported platforms and whether this was actually tried before.

[Francyrad]

It didn't work. My question is: why candi is indicated to install dealii in amr64 if it cannot support arm64?

[ 77%] Linking CXX shared library libstratimikosbelos.dylib
ld: warning: direct access in function 'Thyra::BelosLinearOpWithSolve& Teuchos::dyn_cast<Thyra::BelosLinearOpWithSolve, Thyra::LinearOpWithSolveBase >(Thyra::LinearOpWithSolveBase&)' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
ld: warning: direct access in function 'Thyra::BelosLinearOpWithSolve& Teuchos::dyn_cast<Thyra::BelosLinearOpWithSolve, Thyra::LinearOpWithSolveBase >(Thyra::LinearOpWithSolveBase&)' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
ld: warning: direct access in function 'Thyra::BelosLinearOpWithSolve& Teuchos::dyn_cast<Thyra::BelosLinearOpWithSolve, Thyra::LinearOpWithSolveBase >(Thyra::LinearOpWithSolveBase&)' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
ld: warning: direct access in function 'Thyra::BelosLinearOpWithSolve& Teuchos::dyn_cast<Thyra::BelosLinearOpWithSolve, Thyra::LinearOpWithSolveBase >(Thyra::LinearOpWithSolveBase&)' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
ld: warning: direct access in function 'Teuchos::TypeNameTraits<Thyra::BelosLinearOpWithSolve >::name()' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo name for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
ld: warning: direct access in function 'Teuchos::TypeNameTraits<Thyra::BelosLinearOpWithSolve >::name()' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo name for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
ld: warning: direct access in function 'Teuchos::TypeNameTraits<Thyra::BelosLinearOpWithSolve >::name()' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo name for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
ld: warning: direct access in function 'Teuchos::TypeNameTraits<Thyra::BelosLinearOpWithSolve >::name()' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolveFactory.cpp.o' to global weak symbol 'typeinfo name for Thyra::BelosLinearOpWithSolve' from file 'CMakeFiles/stratimikosbelos.dir/Thyra_BelosLinearOpWithSolve.cpp.o' means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
[ 77%] Built target stratimikosbelos
make: *** [all] Error 2
Failure with exit status: 2
Exit message: There was a problem building trilinos 12-18-1.

[jpthiele]

candi has no other Option since the processor installed on M1 Macs is ARM based and not x86_64 so candi tries it's best to find out your system and what flags it needs. Seems to me like something is missing or broken somewhere.
Sadly I am not aware that any of the candi maintainers would have access to an M1 Mac to try and fix this easily.
However the problem only seems to occur in Stratimikos which uses the newer linear Algebra Stack of Trilinos (Tpetra)
For most applications we solely use the older one so what you could try is set the following options in /deal.II-toolchain/packages/trilinos.package from ON to OFF
-D Trilinos_ENABLE_Stratimikos:BOOL
-D Trilinos_ENABLE_Belos:BOOL
-D Trilinos_ENABLE_Amesos2:BOOL
Which should be lines 227, 229 and 230
Which deal features become unavailable by that I'd have to check.

[Francyrad]

Now it says, even if i disable version 13:

[ 69%] Linking CXX shared library libstratimikosbelos.dylib
Undefined symbols for architecture arm64:
"Amesos2::TachoSolver<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::TachoSolver(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>)", referenced from:
Amesos2::create_solver_with_supported_type<Amesos2::TachoSolver, Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::apply(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>) in Thyra_Amesos2LinearOpWithSolveFactory.cpp.o
"Amesos2::KLU2<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::KLU2(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>)", referenced from:
Amesos2::create_solver_with_supported_type<Amesos2::KLU2, Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::apply(Teuchos::RCP<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >, Teuchos::RCP<Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const>) in Thyra_Amesos2LinearOpWithSolveFactory.cpp.o
ld: symbol(s) not found for architecture arm64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [packages/stratimikos/adapters/amesos2/src/libstratimikosamesos2.13.2.dylib] Error 1
make[1]: *** [packages/stratimikos/adapters/amesos2/src/CMakeFiles/stratimikosamesos2.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
Undefined symbols for architecture arm64:
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getNumVectors() const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDense(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseHeader(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseColumn(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getLocalLength() const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseColumn(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getGlobalLength() const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseHeader(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::get1dCopy(Teuchos::ArrayView const&, unsigned long) const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDenseColumn(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
"Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> >::getVector(unsigned long) const", referenced from:
Tpetra::MatrixMarket::Writer<Tpetra::CrsMatrix<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > >::writeDense(std::__1::basic_ostream<char, std::__1::char_traits >&, Tpetra::MultiVector<float, int, long long, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial, Kokkos::HostSpace> > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&, Teuchos::RCP<Teuchos::basic_FancyOStream<char, std::__1::char_traits > > const&) in Thyra_BelosLinearOpWithSolve.cpp.o
ld: symbol(s) not found for architecture arm64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [packages/stratimikos/adapters/belos/src/libstratimikosbelos.13.2.dylib] Error 1
make[1]: *** [packages/stratimikos/adapters/belos/src/CMakeFiles/stratimikosbelos.dir/all] Error 2
make: *** [all] Error 2
Failure with exit status: 2
Exit message: There was a problem building trilinos 13-2-0.

[tjhei]

@Francyrad Take a look at the M1 instructions at https://github.com/dealii/dealii/wiki/Apple-ARM-M1-OSX if you haven't. I was able to compile using candi using those instructions.

What compiler version are you using (mpicxx -v)?

why candi is indicated to install dealii in amr64 if it cannot support arm64?

While we have initial reports that deal.II is working on arm64, none of the developers actively uses an arm machine.

[Francyrad]

It says:

mpicxx -v
Apple clang version 13.1.6 (clang-1316.0.21.2.5)
Target: arm64-apple-darwin21.5.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin

I can borrow you my arm64 machine via remote session if needed. I really need Dealii to run an important program for me

[blaisb]

Dear @Francyrad , we have managed to compiled deal.II and Lethe (our code which depends on Deal.II, Trilinos and P4est among others) on apple M1 and apple M2 under two differents machines.
The instructions are all there in our documentation:
https://lethe-cfd.github.io/lethe/installation/apple_arm.html

[Francyrad]

dear @blaisb, i followed the instructions as the guide says. However i still got the same error: i cannot install trilnos.
I attach you a .txt file with the whole compilation, i hope it can be of help...
candi_error.txt

[tjhei]

This is not really a deal.II issue, but an issue related to candi. I opened dealii/candi#309 to track it. I will close the issue here. Feel free to comment in the candi issue.

I will investigate in the next few days and report back.