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Context pred GNN Modular #3369
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Context pred GNN Modular #3369
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rbharath
reviewed
Apr 26, 2023
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Let's break out the graphdata changes into their own smaller PR for simplicity
rbharath
approved these changes
May 1, 2023
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LGTM
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Description
Implements the context prediction task for GNNModular from Strategies for Pretraining Graph Neural Networks by Hu et al 2020.
Context prediction is the task of predicting the surrounding nodes and edges of a chosen root node. Empirical results show better performance over masking nodes or edges.
Type of change
Please check the option that is related to your PR.
Checklist
yapf -i <modified file>
and check no errors (yapf version must be 0.32.0)mypy -p deepchem
and check no errorsflake8 <modified file> --count
and check no errorspython -m doctest <modified file>
and check no errors