added to documentation the parameter border_color

deeptools · Mar 28, 2017 · 8c3ca56 · 8c3ca56
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commit 8c3ca56
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Showing 3 changed files with 11 additions and 1 deletion.
diff --git a/docs/content/tools/hicPlotTADs.rst b/docs/content/tools/hicPlotTADs.rst
@@ -107,6 +107,8 @@ section as `color`, `title`, etc.
    file = file.bed
    title = peaks
    color = read
+   # optional boder color. Set to none for no border color
+   border_color = black
    width = 0.5
    # optional. If not given is guessed from the file ending
    file_type = bed
@@ -142,6 +144,8 @@ section as `color`, `title`, etc.
    # color is replaced by the color in the bed file
    # in this case
    color = black
+   # optional boder color. Set to none for no border color
+   border_color = black
    # default behaviour when plotting intervals from a
    # bed file is to 'expand' them such that they
    # do not overlap. The display = collapsed

diff --git a/hicPlotTADS_template.ini b/hicPlotTADS_template.ini
@@ -99,6 +99,8 @@ color = black
 # directive overlaps the intervals.
 display = collapsed
 width = 0.3
+# set to none to remove the border
+border_color = black
 
 [bedgraph]
 file = file.bg

diff --git a/hicexplorer/hicPlotTADs.py b/hicexplorer/hicPlotTADs.py
@@ -46,7 +46,9 @@
 [simple bed]
 file = file.bed
 title = peaks
-color = read
+color = red
+# optional boder color. Set to none for no border color
+border_color = black
 width = 0.5
 # optional. If not given is guessed from the file ending
 file_type = bed
@@ -103,6 +105,8 @@
 # color is replaced by the color in the bed file
 # in this case
 color = black
+# optional boder color. Set to none for no border color
+border_color = black
 # default behaviour when plotting intervals from a
 # bed file is to 'expand' them such that they
 # do not overlap. The display = collapsed