Computes various SV statistics
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R added RCL check Apr 12, 2016
src added GQ sum Aug 2, 2017
.gitignore ignore bin May 23, 2018
.gitmodules removed boost Jun 9, 2015
Makefile fixed bug May 23, 2018
README.md added svprops to dellytools Nov 10, 2016

README.md

SV Properties

Computes various SV statistics from an input Delly VCF file.

Installation

git clone --recursive https://github.com/dellytools/svprops.git

cd svprops/

make all

Usage

./src/svprops [sv.vcf|sv.bcf|sv.vcf.gz] > sv.tab

./src/sampleprops [sv.vcf|sv.bcf|sv.vcf.gz] > sample.tab

Plotting

Rscript R/svprops.R sv.tab

Rscript R/svprops.R sample.tab