fix virsorter2 db setup #54
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Docker | |
| on: | |
| push: | |
| tags: | |
| - 'v*' | |
| - 'docker*' | |
| jobs: | |
| push_to_registry: | |
| name: Push Docker image to Docker Hub | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # - dockerfile: ./docker/viroprofiler-base/Dockerfile | |
| # image: denglab/viroprofiler-base | |
| # - dockerfile: ./docker/viroprofiler-binning/Dockerfile | |
| # image: denglab/viroprofiler-binning | |
| # - dockerfile: ./docker/viroprofiler-geneannot/Dockerfile | |
| # image: denglab/viroprofiler-geneannot | |
| # - dockerfile: ./docker/viroprofiler-host/Dockerfile | |
| # image: denglab/viroprofiler-host | |
| # - dockerfile: ./docker/viroprofiler-replicyc/Dockerfile | |
| # image: denglab/viroprofiler-replicyc | |
| # - dockerfile: ./docker/viroprofiler-taxa/Dockerfile | |
| # image: denglab/viroprofiler-taxa | |
| # - dockerfile: ./docker/viroprofiler-abundance/Dockerfile | |
| # image: denglab/viroprofiler-abundance | |
| # - dockerfile: ./docker/viroprofiler-vibrant/Dockerfile | |
| # image: denglab/viroprofiler-vibrant | |
| # - dockerfile: ./docker/viroprofiler-bracken/Dockerfile | |
| # image: denglab/viroprofiler-bracken | |
| # - dockerfile: ./docker/viroprofiler-phamb/Dockerfile | |
| # image: denglab/viroprofiler-phamb | |
| - dockerfile: ./docker/viroprofiler-virsorter2/Dockerfile | |
| image: denglab/viroprofiler-virsorter2 | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v3 | |
| # Docker Buildx | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Log in to Docker Hub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKER_USER }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ matrix.image }} | |
| - name: Build and push Docker image | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: "." | |
| file: ${{ matrix.dockerfile }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max |