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In step3 I changed call from link_edits() to link_fastas(), since lin…
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…k_edits

didn't exist and link_fastas seemed to do what we want.
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isaacovercast committed Nov 15, 2015
1 parent 085aa04 commit 21cc519
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion ipyrad/core/assembly.py
Original file line number Diff line number Diff line change
Expand Up @@ -738,7 +738,7 @@ def step3(self, samples=None, preview=0, noreverse=0, force=False):
if not self.samples:
## try linking edits from working dir
print("linked fasta files from [working_directory]/edits")
self.link_edits()
self.link_fastas()
## run clustering for all samples
print("clustering {} samples on {} processors".\
format(len(self.samples), self.paramsdict["N_processors"]))
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