Fix references to load_assembly to point to load_json

dereneaton · Jul 29, 2018 · e402946 · e402946
1 parent b3ad7ba
commit e402946
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/docs/API_user-guide.rst b/docs/API_user-guide.rst
@@ -932,7 +932,7 @@ params file for use by the *ipyrad* command line tool.
     data1.save()
     
     ## load assembly object
-    data1 = ip.load_assembly("pedicularis/data1.json")
+    data1 = ip.load_json("pedicularis/data1.json")
     
     ## write params file for use by the CLI
     data1.write_params()
diff --git a/docs/API_userguide.rst b/docs/API_userguide.rst
@@ -776,7 +776,7 @@ params file for use by the *ipyrad* command line tool.
     data1.save()
     
     ## load assembly object
-    data1 = ip.load_assembly("pedicularis/data1.json")
+    data1 = ip.load_json("pedicularis/data1.json")
     
     ## write params file for use by the CLI
     data1.write_params()
diff --git a/docs/plotting.rst b/docs/plotting.rst
@@ -35,7 +35,7 @@ visualize.
 .. code-block:: python
 
     ## load the assembly that is passed step 3
-    data1 = ip.load.load_assembly("tests/data1")
+    data1 = ip.load_json("tests/data1.json")
 
     ## this example has 12 Samples
     data1.samples

diff --git a/docs/test_rad.rst b/docs/test_rad.rst
@@ -274,7 +274,7 @@ Step 4: Joint estimation of heterozygosity and error rate
 .. code:: python
 
     import ipyrad as ip
-    data1 = ip.load_assembly("test_rad/data1")
+    data1 = ip.load_json("test_rad/data1.json")
 
 .. code:: python
 
@@ -347,5 +347,5 @@ the ``save`` command.
     #ip.save_assembly("data1.p")
     
     ## load assembly object
-    #data = ip.load_assembly("data1.p")
+    #data = ip.load_json("data1.p.json")
     #print data.name