Updates for files in fuji and guadalupe

.github/workflows/python-package.yml

@@ -17,8 +17,9 @@ jobs:
             fail-fast: true
             matrix:
                 os: [ubuntu-latest]
-                python-version: [3.7, 3.8, 3.9]
-                astropy-version: ['<4.1', '<5.0']
+                python-version: ['3.8', '3.9']  #, '3.10'] Astropy4 plust 3.10 doesn't seem to work very well.
+                astropy-version: ['<4.1', '<5.0', '<5.1']
+                desiutil-version: ['3.2.5']
 
         steps:
             - name: Checkout code
@@ -33,8 +34,8 @@ jobs:
               run: |
                 python -m pip install --upgrade pip wheel
                 python -m pip install pytest
-                if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
-                pip install -U "astropy${{ matrix.astropy-version }}"
+                python -m pip install "git+https://github.com/desihub/desiutil.git@${{ matrix.desiutil-version }}#egg=desiutil"
+                python -m pip install "astropy${{ matrix.astropy-version }}"
             - name: Run the test
               run: |
                 pytest
@@ -46,7 +47,7 @@ jobs:
             fail-fast: true
             matrix:
                 os: [ubuntu-latest]
-                python-version: [3.8]
+                python-version: [3.9]
 
         steps:
             - name: Checkout code
@@ -61,7 +62,7 @@ jobs:
               run: |
                 python -m pip install --upgrade pip wheel
                 python -m pip install pytest pytest-cov coveralls
-                if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+                python -m pip install -r requirements.txt
             - name: Run the test with coverage
               run: |
                 pytest --cov
@@ -79,7 +80,7 @@ jobs:
             fail-fast: false
             matrix:
                 os: [ubuntu-latest]
-                python-version: [3.8]
+                python-version: [3.9]
 
         steps:
             - name: Checkout code
@@ -93,19 +94,20 @@ jobs:
             - name: Install Python dependencies
               run: |
                 python -m pip install --upgrade pip wheel
-                python -m pip install docutils\<0.18 Sphinx
+                python -m pip install Sphinx sphinx-toolbox
             - name: Test the documentation
               run: |
                 sphinx-build -W --keep-going -b html doc doc/_build/html
 
     style:
-        name: Check code style; allow failures.
+        # name: Check code style; allow failures.
+        name: Check code style.
         runs-on: ${{ matrix.os }}
         strategy:
             fail-fast: false
             matrix:
                 os: [ubuntu-latest]
-                python-version: [3.8]
+                python-version: [3.9]
 
         steps:
             - name: Checkout code
@@ -122,6 +124,6 @@ jobs:
                 python -m pip install pycodestyle
             - name: Test the style
               # This is equivalent to an allowed falure.
-              continue-on-error: true
+              # continue-on-error: true
               run: |
                 pycodestyle --count py/desidatamodel

doc/DESI_SPECTRO_REDUX/SPECPROD/calibnight/NIGHT/biasnight-CAMERA-NIGHT.rst

@@ -0,0 +1,161 @@
+===========================
+biasnight-CAMERA-NIGHT.fits
+===========================
+
+:Summary: *This section should be filled in with a high-level description of
+    this file. In general, you should remove or replace the emphasized text
+    (\*this text is emphasized\*) in this document.*
+:Naming Convention: ``biasnight-CAMERA-NIGHT.fits.gz``, where ``CAMERA`` is
+    *e.g.*, "b0", "r5", etc. and ``NIGHT`` is the observation night in
+    YYYYMMDD format.
+:Regex: ``biasnight-[brz][0-9]-[0-9]{8}\.fits\.gz``
+:File Type: FITS, 20 MB
+
+Contents
+========
+
+====== ======= ===== ===================
+Number EXTNAME Type  Contents
+====== ======= ===== ===================
+HDU0_  BIAS    IMAGE *Brief Description*
+====== ======= ===== ===================
+
+
+FITS Header Units
+=================
+
+HDU0
+----
+
+EXTNAME = BIAS
+
+*Summarize the contents of this HDU.*
+
+Required Header Keywords
+~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. collapse:: Required Header Keywords table
+
+   .. rst-class:: keywords
+
+    ======== ===================================== ===== =======================================
+    KEY      Example Value                         Type  Comment
+    ======== ===================================== ===== =======================================
+    NAXIS1   4256                                  int
+    NAXIS2   4194                                  int
+    TELESCOP KPNO 4.0-m telescope                  str   Telescope name
+    INSTRUME DESI                                  str   Instrument name
+    SPECGRPH 8                                     int   Spectrograph logical name (SP)
+    SPECID   2                                     int   Spectrograph serial number (SM)
+    DETECTOR M1-42                                 str   Detector (ccd) identification
+    CAMERA   z8                                    str   Camera name
+    CCDNAME  CCDSM2Z                               str   CCD name
+    CCDPREP  purge,clear                           str   CCD prep actions
+    CCDSIZE  4194,4256                             str   CCD size in pixels (rows, columns)
+    CCDTEMP  -136.0659                             float [deg C] CCD controller CCD temperature
+    CPUTEMP  57.3633                               float [deg C] CCD controller CPU temperature
+    CASETEMP 57.3533                               float [deg C] CCD controller case temperature
+    CCDTMING flatdark_lbnl_timing.txt              str   CCD timing file
+    CCDCFG   default_lbnl_20210128.cfg             str   CCD configuration file
+    SETTINGS detectors_sm_20210128.json            str   Name of DESI CCD settings file
+    VESSEL   9                                     int   Cryostat serial number
+    FEEVER   v20160312                             str   CCD Controller version
+    FEEBOX   lbnl055                               str   CCD Controller serial number
+    PRESECA  [1:7, 2:2065]                         str   Prescan section for quadrant A
+    PRRSECA  [8:2064, 1:1]                         str   Row prescan section for quadrant A
+    DATASECA [8:2064, 2:2065]                      str   Data section for quadrant A
+    TRIMSECA [8:2064, 2:2065]                      str   Trim section for quadrant A
+    BIASSECA [2065:2128, 2:2065]                   str   Bias section for quadrant A
+    ORSECA   [8:2064, 2066:2097]                   str   Row overscan section for quadrant A
+    CCDSECA  [1:2057, 1:2064]                      str   CCD section for quadrant A
+    DETSECA  [1:2057, 1:2064]                      str   Detector section for quadrant A
+    AMPSECA  [1:2057, 1:2064]                      str   AMP section for quadrant A
+    PRESECB  [4250:4256, 2:2065]                   str   Prescan section for quadrant B
+    PRRSECB  [2193:4249, 1:1]                      str   Row prescan section for quadrant B
+    DATASECB [2193:4249, 2:2065]                   str   Data section for quadrant B
+    TRIMSECB [2193:4249, 2:2065]                   str   Trim section for quadrant B
+    BIASSECB [2129:2192, 2:2065]                   str   Bias section for quadrant B
+    ORSECB   [2193:4249, 2066:2097]                str   Row overscan section for quadrant B
+    CCDSECB  [2058:4114, 1:2064]                   str   CCD section for quadrant B
+    DETSECB  [2058:4114, 1:2064]                   str   Detector section for quadrant B
+    AMPSECB  [4114:2058, 1:2064]                   str   AMP section for quadrant B
+    PRESECC  [1:7, 2130:4193]                      str   Prescan section for quadrant C
+    PRRSECC  [8:2064, 4194:4194]                   str   Row prescan section for quadrant C
+    DATASECC [8:2064, 2130:4193]                   str   Data section for quadrant C
+    TRIMSECC [8:2064, 2130:4193]                   str   Trim section for quadrant C
+    BIASSECC [2065:2128, 2130:4193]                str   Bias section for quadrant C
+    ORSECC   [8:2064, 2098:2129]                   str   Row overscan section for quadrant C
+    CCDSECC  [1:2057, 2065:4128]                   str   CCD section for quadrant C
+    DETSECC  [1:2057, 2065:4128]                   str   Detector section for quadrant C
+    AMPSECC  [1:2057, 4128:2065]                   str   AMP section for quadrant C
+    PRESECD  [4250:4256, 2130:4193]                str   Prescan section for quadrant D
+    PRRSECD  [2193:4249, 4194:4194]                str   Row prescan section for quadrant D
+    DATASECD [2193:4249, 2130:4193]                str   Data section for quadrant D
+    TRIMSECD [2193:4249, 2130:4193]                str   Trim section for quadrant D
+    BIASSECD [2129:2192, 2130:4193]                str   Bias section for quadrant D
+    ORSECD   [2193:4249, 2098:2129]                str   Row bias section for quadrant D
+    CCDSECD  [2058:4114, 2065:4128]                str   CCD section for quadrant D
+    DETSECD  [2058:4114, 2065:4128]                str   Detector section for quadrant D
+    AMPSECD  [4114:2058, 4128:2065]                str   AMP section for quadrant D
+    DAC0     -9.0002,-9.0331                       str   [V] set value, measured value
+    DAC1     -9.0002,-8.9816                       str   [V] set value, measured value
+    DAC2     -9.0002,-8.961                        str   [V] set value, measured value
+    DAC3     -9.0002,-8.9816                       str   [V] set value, measured value
+    DAC4     5.9998,6.0437                         str   [V] set value, measured value
+    DAC5     5.9998,6.0595                         str   [V] set value, measured value
+    DAC6     5.9998,5.9964                         str   [V] set value, measured value
+    DAC7     5.9998,6.0069                         str   [V] set value, measured value
+    DAC8     -25.0003,-25.0796                     str   [V] set value, measured value
+    DAC9     -25.0003,-25.3467                     str   [V] set value, measured value
+    DAC10    -25.0003,-25.0648                     str   [V] set value, measured value
+    DAC11    -25.0003,-25.3467                     str   [V] set value, measured value
+    DAC12    0.0,-0.0148                           str   [V] set value, measured value
+    DAC13    0.0,-0.0297                           str   [V] set value, measured value
+    DAC14    0.0,-0.0297                           str   [V] set value, measured value
+    DAC15    0.0,-0.0148                           str   [V] set value, measured value
+    DAC16    39.9961,39.4548                       str   [V] set value, measured value
+    DAC17    20.0008,12.2854                       str   [V] set value, measured value
+    CLOCK0   9.9999,0.0                            str   [V] high rail, low rail
+    CLOCK1   9.9999,0.0                            str   [V] high rail, low rail
+    CLOCK2   9.9999,0.0                            str   [V] high rail, low rail
+    CLOCK3   -2.0001,3.9999                        str   [V] high rail, low rail
+    CLOCK4   9.9999,0.0                            str   [V] high rail, low rail
+    CLOCK5   9.9999,0.0                            str   [V] high rail, low rail
+    CLOCK6   9.9999,0.0                            str   [V] high rail, low rail
+    CLOCK7   -2.0001,3.9999                        str   [V] high rail, low rail
+    CLOCK8   9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK9   9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK10  9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK11  9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK12  9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK13  9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK14  9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK15  9.9992,2.9993                         str   [V] high rail, low rail
+    CLOCK16  9.9999,3.0                            str   [V] high rail, low rail
+    CLOCK17  9.0,0.9999                            str   [V] high rail, low rail
+    CLOCK18  9.0,0.9999                            str   [V] high rail, low rail
+    OFFSET0  0.4000000059604645,-9.0434            str   [V] set value, measured value
+    OFFSET1  0.4000000059604645,-8.9816            str   [V] set value, measured value
+    OFFSET2  0.4000000059604645,-8.961             str   [V] set value, measured value
+    OFFSET3  0.4000000059604645,-8.9713            str   [V] set value, measured value
+    OFFSET4  2.0,6.0385                            str   [V] set value, measured value
+    OFFSET5  2.0,6.0648                            str   [V] set value, measured value
+    OFFSET6  2.0,6.0017                            str   [V] set value, measured value
+    OFFSET7  2.0,6.0017                            str   [V] set value, measured value
+    DELAYS   20, 20, 25, 40, 7, 3000, 7, 7, 400, 7 str   [10] Delay settings
+    CDSPARMS 400, 400, 8, 2000                     str   CDS parameters
+    PGAGAIN  3                                     int   Controller gain
+    OCSVER   1.2                                   float OCS software version
+    DOSVER   trunk                                 str   DOS software version
+    CONSTVER DESI:CURRENT                          str   Constants version
+    BUNIT    adu                                   str
+    NIGHT    20210407                              int
+    ======== ===================================== ===== =======================================
+
+Data: FITS image [float32, 4256x4194]
+
+
+Notes and Examples
+==================
+
+*Add notes and examples here.  You can also create links to example files.*