clean up env variables #731
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# Workflow is based on the Astropy GitHub actions workflow, ci_workflows.yml | |
name: CI | |
on: | |
push: | |
branches: | |
- '*' | |
tags: | |
- '*' | |
pull_request: | |
jobs: | |
tests: | |
name: Unit tests | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: true | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ['3.10', '3.11'] | |
fitsio-version: ['>=1.1.7'] | |
env: | |
DESIUTIL_VERSION: 3.4.2 | |
FASTSPECFIT: ${GITHUB_WORKSPACE}/fastspecfit | |
DESI_ROOT: ${FASTSPECFIT}/desi | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Python dependencies | |
run: | | |
python -m pip install --upgrade pip wheel | |
python -m pip install pytest | |
python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil | |
python -m pip install -r requirements.txt | |
python -m pip cache remove fitsio | |
python -m pip install --no-deps --force-reinstall --ignore-installed 'fitsio${{ matrix.fitsio-version }}' | |
- name: Verify Installation | |
run: pip list | |
- name: Run the test | |
run: PYTHONPATH=${GITHUB_WORKSPACE}/py FASTSPECFIT=${GITHUB_WORKSPACE} DESI_ROOT=${GITHUB_WORKSPACE}/desi pytest | |
coverage: | |
name: Test coverage | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: true | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ['3.10', '3.11'] | |
fitsio-version: ['>=1.1.7'] | |
env: | |
DESIUTIL_VERSION: 3.4.2 | |
FASTSPECFIT: ${GITHUB_WORKSPACE}/fastspecfit | |
DESI_ROOT: ${FASTSPECFIT}/desi | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Python dependencies | |
run: | | |
python -m pip install --upgrade pip wheel | |
python -m pip install pytest pytest-cov coveralls | |
python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil | |
python -m pip install -r requirements.txt | |
python -m pip cache remove fitsio | |
python -m pip install --no-deps --force-reinstall --ignore-installed 'fitsio${{ matrix.fitsio-version }}' | |
- name: Run the test with coverage | |
run: pytest --cov | |
- name: Coveralls | |
env: | |
COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }} | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
run: coveralls --service=github | |
docs: | |
name: Doc test | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ['3.11'] | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Python dependencies | |
run: | | |
python -m pip install --upgrade pip wheel | |
python -m pip install Sphinx sphinx-toolbox | |
- name: Test the documentation | |
run: sphinx-build -W --keep-going -b html doc doc/_build/html | |
style: | |
name: Style check | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ['3.11'] | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Python dependencies | |
run: python -m pip install --upgrade pip wheel pycodestyle | |
- name: Test the style; failures are allowed | |
# This is equivalent to an allowed falure. | |
continue-on-error: true | |
run: pycodestyle --count py/fastspecfit |