mpi: move distribution from property to method taking the map as input

devito/mpi/distributed.py

@@ -312,7 +312,7 @@ def glb_to_rank(self, index):
             The index, or array of indices, for which the owning MPI rank(s) is
             retrieved.
         """
-        # assert isinstance(index, np.array)
+        assert isinstance(index, np.ndarray)
         if index.shape[0] == 0:
             return None
         elif sum(index.shape) == 1:
@@ -329,7 +329,6 @@ def glb_to_rank(self, index):
             ret[r] = filter_ordered(inds[0])
         return ret
 
-
     @property
     def neighborhood(self):
         """

devito/types/dense.py

@@ -1452,9 +1452,6 @@ def _arg_values(self, **kwargs):
     def parent(self):
         return self._parent
 
-    def __hash__(self):
-        return hash(self.data._local.tobytes())
-
     _pickle_kwargs = Function._pickle_kwargs + ['parent']
 
 

devito/types/sparse.py

@@ -17,8 +17,6 @@
 from devito.types.basic import Symbol
 from devito.types.equation import Eq, Inc
 
-import time
-
 __all__ = ['SparseFunction', 'SparseTimeFunction', 'PrecomputedSparseFunction',
            'PrecomputedSparseTimeFunction', 'MatrixSparseTimeFunction']
 
@@ -125,7 +123,7 @@ def _support(self):
         injection/interpolation operators.
         """
         max_shape = np.array(self.grid.shape).reshape(1, self.grid.dim)
-        minmax = lambda arr : np.minimum(max_shape, np.maximum(0, arr))
+        minmax = lambda arr: np.minimum(max_shape, np.maximum(0, arr))
         return np.stack([minmax(self.gridpoints + s) for s in self._point_support],
                         axis=2)
 
@@ -137,62 +135,57 @@ def _dist_datamap(self):
         dmap = self.grid.distributor.glb_to_rank(self._support)
         return dmap or {}
 
-    @property
-    def _dist_scatter_mask(self):
+    def _dist_scatter_mask(self, dmap=None):
         """
         A mask to index into ``self.data``, which creates a new data array that
         logically contains N consecutive groups of sparse data values, where N
         is the number of MPI ranks. The i-th group contains the sparse data
         values accessible by the i-th MPI rank.  Thus, sparse data values along
         the boundary of two or more MPI ranks are duplicated.
         """
-        dmap = self._dist_datamap
+        dmap = dmap or self._dist_datamap
         mask = np.array(flatten(dmap[i] for i in sorted(dmap)), dtype=int)
-        ret = [slice(None) for i in range(self.ndim)]
+        ret = [slice(None) for _ in range(self.ndim)]
         ret[self._sparse_position] = mask
         return tuple(ret)
 
-    @property
-    def _dist_subfunc_scatter_mask(self):
+    def _dist_subfunc_scatter_mask(self, dmap=None):
         """
         This method is analogous to :meth:`_dist_scatter_mask`, although
         the mask is now suitable to index into self's SubFunctions, rather
         than into ``self.data``.
         """
-        return self._dist_scatter_mask[self._sparse_position]
+        return self._dist_scatter_mask(dmap=dmap)[self._sparse_position]
 
-    @property
-    def _dist_gather_mask(self):
+    def _dist_gather_mask(self, dmap=None):
         """
         A mask to index into the ``data`` received upon returning from
         ``self._dist_alltoall``. This mask creates a new data array in which
         duplicate sparse data values have been discarded. The resulting data
         array can thus be used to populate ``self.data``.
         """
-        ret = list(self._dist_scatter_mask)
+        ret = list(self._dist_scatter_mask(dmap=dmap))
         mask = ret[self._sparse_position]
         inds = np.unique(mask, return_index=True)[1]
         inds.sort()
         ret[self._sparse_position] = inds.tolist()
 
         return tuple(ret)
 
-    @property
-    def _dist_subfunc_gather_mask(self):
+    def _dist_subfunc_gather_mask(self, dmap=None):
         """
         This method is analogous to :meth:`_dist_subfunc_scatter_mask`, although
         the mask is now suitable to index into self's SubFunctions, rather
         than into ``self.data``.
         """
-        return self._dist_gather_mask[self._sparse_position]
+        return self._dist_gather_mask(dmap=dmap)[self._sparse_position]
 
-    @property
-    def _dist_count(self):
+    def _dist_count(self, dmap=None):
         """
         A 2-tuple of comm-sized iterables, which tells how many sparse points
         is this MPI rank expected to send/receive to/from each other MPI rank.
         """
-        dmap = self._dist_datamap
+        dmap = dmap or self._dist_datamap
         comm = self.grid.distributor.comm
 
         ssparse = np.array([len(dmap.get(i, [])) for i in range(comm.size)], dtype=int)
@@ -210,13 +203,12 @@ def _dist_reorder_mask(self):
         ret += tuple(i for i, d in enumerate(self.indices) if d is not self._sparse_dim)
         return ret
 
-    @property
-    def _dist_alltoall(self):
+    def _dist_alltoall(self, dmap=None):
         """
         The metadata necessary to perform an ``MPI_Alltoallv`` distributing the
         sparse data values across the MPI ranks needing them.
         """
-        ssparse, rsparse = self._dist_count
+        ssparse, rsparse = self._dist_count(dmap=dmap)
 
         # Per-rank shape of send/recv data
         sshape = []
@@ -252,8 +244,7 @@ def _dist_alltoall(self):
 
         return sshape, scount, sdisp, rshape, rcount, rdisp
 
-    @property
-    def _dist_subfunc_alltoall(self):
+    def _dist_subfunc_alltoall(self, dmap=None):
         """
         The metadata necessary to perform an ``MPI_Alltoallv`` distributing
         self's SubFunction values across the MPI ranks needing them.
@@ -283,13 +274,11 @@ def _arg_defaults(self, alias=None):
 
         # Add in the sparse data (as well as any SubFunction data) belonging to
         # self's local domain only
-        print(self)
-        t0 = time.process_time()
         for k, v in self._dist_scatter().items():
             args[mapper[k].name] = v
             for i, s in zip(mapper[k].indices, v.shape):
                 args.update(i._arg_defaults(_min=0, size=s))
-        print(time.process_time() - t0)
+
         return args
 
     def _eval_at(self, func):
@@ -615,13 +604,8 @@ def _index_matrix(self, offset):
     def gridpoints(self):
         if self.coordinates._data is None:
             raise ValueError("No coordinates attached to this SparseFunction")
-        return self._gridpoints(coords=self.coordinates)
-
-    @memoized_meth
-    def _gridpoints(self, coords=None):
-        coords = coords or self.coordinates
         return (
-            np.floor(coords.data._local - self.grid.origin) / self.grid.spacing
+            np.floor(self.coordinates.data._local - self.grid.origin) / self.grid.spacing
         ).astype(int)
 
     def guard(self, expr=None, offset=0):
@@ -674,9 +658,9 @@ def _decomposition(self):
         mapper = {self._sparse_dim: self._distributor.decomposition[self._sparse_dim]}
         return tuple(mapper.get(d) for d in self.dimensions)
 
-    @property
-    def _dist_subfunc_alltoall(self):
-        ssparse, rsparse = self._dist_count
+    def _dist_subfunc_alltoall(self, dmap=None):
+        dmap = dmap or self._dist_datamap
+        ssparse, rsparse = self._dist_count(dmap=dmap)
 
         # Per-rank shape of send/recv `coordinates`
         sshape = [(i, self.grid.dim) for i in ssparse]
@@ -710,22 +694,28 @@ def _dist_scatter(self, data=None):
         comm = distributor.comm
         mpitype = MPI._typedict[np.dtype(self.dtype).char]
 
+        # Compute dist map only once
+        dmap = self._dist_datamap
+
         # Pack sparse data values so that they can be sent out via an Alltoallv
-        data = data[self._dist_scatter_mask]
+        data = data[self._dist_scatter_mask(dmap=dmap)]
         data = np.ascontiguousarray(np.transpose(data, self._dist_reorder_mask))
+
         # Send out the sparse point values
-        _, scount, sdisp, rshape, rcount, rdisp = self._dist_alltoall
+        _, scount, sdisp, rshape, rcount, rdisp = self._dist_alltoall(dmap=dmap)
         scattered = np.empty(shape=rshape, dtype=self.dtype)
         comm.Alltoallv([data, scount, sdisp, mpitype],
                        [scattered, rcount, rdisp, mpitype])
         data = scattered
+
         # Unpack data values so that they follow the expected storage layout
         data = np.ascontiguousarray(np.transpose(data, self._dist_reorder_mask))
 
         # Pack (reordered) coordinates so that they can be sent out via an Alltoallv
-        coords = self.coordinates.data._local[self._dist_subfunc_scatter_mask]
+        coords = self.coordinates.data._local[self._dist_subfunc_scatter_mask(dmap=dmap)]
+
         # Send out the sparse point coordinates
-        _, scount, sdisp, rshape, rcount, rdisp = self._dist_subfunc_alltoall
+        _, scount, sdisp, rshape, rcount, rdisp = self._dist_subfunc_alltoall(dmap=dmap)
         scattered = np.empty(shape=rshape, dtype=self.coordinates.dtype)
         comm.Alltoallv([coords, scount, sdisp, mpitype],
                        [scattered, rcount, rdisp, mpitype])
@@ -745,28 +735,33 @@ def _dist_gather(self, data, coords):
 
         comm = distributor.comm
 
+        # Compute dist map only once
+        dmap = self._dist_datamap
+
         # Pack sparse data values so that they can be sent out via an Alltoallv
         data = np.ascontiguousarray(np.transpose(data, self._dist_reorder_mask))
         # Send back the sparse point values
-        sshape, scount, sdisp, _, rcount, rdisp = self._dist_alltoall
+        sshape, scount, sdisp, _, rcount, rdisp = self._dist_alltoall(dmap=dmap)
         gathered = np.empty(shape=sshape, dtype=self.dtype)
         mpitype = MPI._typedict[np.dtype(self.dtype).char]
         comm.Alltoallv([data, rcount, rdisp, mpitype],
                        [gathered, scount, sdisp, mpitype])
         # Unpack data values so that they follow the expected storage layout
         gathered = np.ascontiguousarray(np.transpose(gathered, self._dist_reorder_mask))
-        self._data[:] = gathered[self._dist_gather_mask]
+        self._data[:] = gathered[self._dist_gather_mask(dmap=dmap)]
 
         if coords is not None:
             # Pack (reordered) coordinates so that they can be sent out via an Alltoallv
             coords = coords + np.array(self.grid.origin_offset, dtype=self.dtype)
             # Send out the sparse point coordinates
-            sshape, scount, sdisp, _, rcount, rdisp = self._dist_subfunc_alltoall
+            sshape, scount, sdisp, _, rcount, rdisp = \
+                self._dist_subfunc_alltoall(dmap=dmap)
             gathered = np.empty(shape=sshape, dtype=self.coordinates.dtype)
             mpitype = MPI._typedict[np.dtype(self.coordinates.dtype).char]
             comm.Alltoallv([coords, rcount, rdisp, mpitype],
                            [gathered, scount, sdisp, mpitype])
-            self._coordinates.data._local[:] = gathered[self._dist_subfunc_gather_mask]
+            self._coordinates.data._local[:] = \
+                gathered[self._dist_subfunc_gather_mask(dmap=dmap)]
 
         # Note: this method "mirrors" `_dist_scatter`: a sparse point that is sent
         # in `_dist_scatter` is here received; a sparse point that is received in

examples/seismic/utils.py

@@ -12,7 +12,7 @@
 def setup_geometry(model, tn, f0=0.010):
     # Source and receiver geometries
     src_coordinates = np.empty((1, model.dim))
-    src_coordinates[0, :] = np.array(model.domain_size) * .45
+    src_coordinates[0, :] = np.array(model.domain_size) * .5
     if model.dim > 1:
         src_coordinates[0, -1] = model.origin[-1] + model.spacing[-1]
 
@@ -25,7 +25,7 @@ def setup_geometry(model, tn, f0=0.010):
 
 
 def setup_rec_coords(model):
-    nrecx = model.shape[0] - 1
+    nrecx = model.shape[0]
     recx = np.linspace(model.origin[0], model.domain_size[0], nrecx)
 
     if model.dim == 1: