Cheng JHT, Bredow M, Monaghan J, diCenzo GC. (2021) Proteobacteria contain diverse flg22 epitopes that elicit varying immune responses in Arabidopsis thaliana. Molecular Plant-Microbe Interactions. doi:10.1094/MPMI-11-20-0314-SC.
This repository contains a set of scripts used to perform the flg22 analyses (from flagellin collection through to phylogeny construction) reported in the above paper. The entire pipeline can be performed by running the overall_workflow.sh script. If you use adaptations of any of these scripts or pipelines as part of your work, please cite our article.