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export_mtz: don't change basis to reference setting #1279

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merged 5 commits into from
Jun 3, 2020

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@rjgildea rjgildea commented Jun 2, 2020

This can lead to inconsistencies between the batches, miller indices and the overall mtz space group and unit cell.

Fixes #1278

This can lead to inconsistencies between the batches,
miller indices and the overall mtz space group and unit cell.

Fixes # 1278
@rjgildea rjgildea marked this pull request as ready for review June 2, 2020 21:33
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rjgildea commented Jun 2, 2020

This depends on dials/data#190 and dials/data-files#17 for the new test.

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Change set looks good, wonder if we should push the small molecule test set up as well, which triggered the original warning? Implementation of the test is neat 👍

@rjgildea rjgildea merged commit efff60c into master Jun 3, 2020
@rjgildea rjgildea deleted the export_mtz_no_change_basis branch June 3, 2020 16:44
rjgildea added a commit that referenced this pull request Jun 29, 2020
This can lead to inconsistencies between the batches,
miller indices and the overall mtz space group and unit cell.

Test export_mtz works as expected given input in non-reference setting

Fixes #1278
@ndevenish ndevenish mentioned this pull request Jul 6, 2020
ndevenish added a commit that referenced this pull request Jul 6, 2020
Features
--------

- Developer tool: On posix systems, sending SIGUSR2 to DIALS commands will now print a stack trace (#1277)

Bugfixes
--------
- HTML reports: Plot bin centres instead bin minimum for d_min line plots vs. resolution (#1323)
- `dials.export`: Fix inconsistency in mtz export when given a non-reference (e.g. I2 or primitive) setting (#1279)
- `dials.refine_bravais_settings`: Fix crash with large (>2gb) reflection tables and reduce memory use (#1274)
- `dials.scale`: Fix bug in outlier rejection code causing misidentification of outliers (with outlier_rejection=standard).
- `dials.scale`: Fix outlier rejection formula to avoid overconfidence in spuriously low values
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dials.export makes a mess of MTZ file when space group is I2
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