This repository contains code for sourmash branchwater biogeography search validation mapping with genome-grist and assembly of metagenome hits. conf-antarctic.yml is the file used for genome-grist v0.9.0.
The code to generate the metagenome-assembled genomes (MAGs) is at https://github.com/jessicalumian/vanda_mags and https://github.com/jessicalumian/fryxell-phormidium.
The SRA-wide branchwater search is described at: https://dib-lab.github.io/2022-paper-branchwater-software/
Jupyter Notebook for searching: https://hub.binder.pangeo.io/user/luizirber-2020-09-06-jct-3b3e9wdj/lab