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WIP: update CI.

WIP: update CI. #185

Workflow file for this run

name: Test
on: [push, pull_request]
jobs:
test:
runs-on: ubuntu-latest
strategy:
matrix:
python: ["3.10"]
name: Python ${{ matrix.python }}
# We want to run on external PRs, but not on our own internal PRs as they'll be run by the push to the branch.
if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: cache conda
uses: actions/cache@v3
env:
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key:
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
- name: setup conda
uses: conda-incubator/setup-miniconda@3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3
with:
auto-update-conda: true
python-version: 3.9
channels: conda-forge,bioconda
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
mamba-version: "*"
activate-environment: sourmash_dev
auto-activate-base: false
use-only-tar-bz2: true
- name: Install coverage dependencies
run: pip install pytest-cov pytest-dependency setuptools
# - name: Build
# run: python setup.py build_ext --inplace
- name: Install charcoal
run: pip install -e .
- run: pytest tests
# - run: pytest tests --cov=.
# - name: Upload coverage to Codecov
# uses: codecov/codecov-action@v1