-
Notifications
You must be signed in to change notification settings - Fork 1
/
setup.py
46 lines (41 loc) · 1.86 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
from setuptools import setup, find_packages
# read the contents of your README file
from os import path
this_directory = path.abspath(path.dirname(__file__))
with open(path.join(this_directory, "README.md"), encoding="utf-8") as f:
long_description = f.read()
CLASSIFIERS = [
"Environment :: Console",
"Environment :: MacOS X",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Natural Language :: English",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
setup(
name = 'distillerycats',
description="Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.",
url="https://github.com/dib-lab/distillerycats",
author="Taylor Reiter, N. Tessa Pierce and C. Titus Brown",
author_email="tereiter@ucdavis.edu,ntpierce@gmail.com,titus@idyll.org",
license="BSD 3-clause",
packages = find_packages(),
classifiers = CLASSIFIERS,
entry_points = {'console_scripts': ['distillerycats = distillerycats.__main__:main']},
include_package_data=True,
package_data = { "distillerycats": ["Snakefile", "*.yaml", "*.yml", "*.ipynb"] },
setup_requires = [ "setuptools>=38.6.0",
'setuptools_scm',
'setuptools_scm_git_archive',
'pytest-runner'],
use_scm_version = {"write_to": "distillerycats/version.py"},
install_requires = ['snakemake>=6.3.0', 'click>=8', 'pandas'],
tests_require=["pytest>=5.1.2", "pytest-dependency"],
long_description=long_description,
long_description_content_type="text/markdown",
)