load-in22-count: use new ht.n_unique_kmers method

New API feature in ChangeLog on 2014-11-06. Also solves merge conflict (hopefully) modified: scripts/load-into-counting.py
dib-lab · Nov 18, 2014 · 455c856 · 455c856
1 parent a2c23c7
commit 455c856
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/scripts/load-into-counting.py b/scripts/load-into-counting.py
@@ -122,11 +122,11 @@ def main():
         with open(base + '.info', 'a') as info_fh:
             print >> info_fh, 'through', filename
 
-    n_kmers = htable.n_occupied()
+    n_kmers = htable.n_unique_kmers()
     if args.report_total_kmers:
-        print >> sys.stderr, 'Total number of k-mers:', n_kmers
+        print >> sys.stderr, 'Total number of unique k-mers:', n_kmers
         with open(base + '.info', 'a') as info_fp:
-            print >>info_fp, 'Total number of k-mers:', n_kmers
+            print >>info_fp, 'Total number of unique k-mers:', n_kmers
 
     print >>sys.stderr, 'saving', base
     htable.save(base)