added test for #361, indent problem in script

dib-lab · Sep 24, 2014 · 4e0b6c6 · 4e0b6c6
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diff --git a/ChangeLog b/ChangeLog
@@ -1,3 +1,6 @@
+2014-09-22 Sherine Awad <sherine.awad@gmail.com>
+    * scripts/normalize-by-median.py: catch expections generated by wrong indentation for 'total'
+
 2014-09-10  Titus Brown  <titus@idyll.org>
 
     * sandbox/calc-median-distribution.py: catch exceptions generated by reads

diff --git a/tests/test-data/normC20k20.kh b/tests/test-data/normC20k20.kh
diff --git a/tests/test_scripts.py b/tests/test_scripts.py
@@ -262,6 +262,16 @@ def test_filter_stoptags():
     assert 'GGTTGACGGGGCTCAGGG' in seqs, seqs
 
 
+def test_normalize_by_median_indent():
+    infile = utils.get_test_data('paired-mixed.fa.pe')
+    hashfile = utils.get_test_data('normC20k20.kh')
+    script = scriptpath('normalize-by-median.py')
+    args = ['--loadtable', hashfile, infile]
+    (status, out, err) = utils.runscript(script, args)
+    assert status == 0, (out, err)
+    print (out, err)
+
+
 def test_normalize_by_median():
     CUTOFF = '1'