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Cython tidying #1774

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Cython tidying #1774

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Commits on Sep 6, 2017

  1. Move hashing functions to Cython

    @camillescott
    camillescott committed Sep 6, 2017
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  2. Convert get_version_cpp to Cython

    @camillescott
    camillescott committed Sep 6, 2017
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  3. Allow hash functions to accept string derivitives

    @camillescott
    camillescott committed Sep 6, 2017
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  4. cythonize FILETYPES dict

    @camillescott
    camillescott committed Sep 6, 2017
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Commits on Sep 7, 2017

  1. move extraction functions to graph classes

    @camillescott
    camillescott committed Sep 7, 2017
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  2. Remove __future__ imports

    @camillescott
    camillescott committed Sep 7, 2017
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  3. Introduce paired_fastx_handler, update sample-reads-randomly

    @camillescott
    camillescott committed Sep 7, 2017
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Commits on Sep 8, 2017

  1. Split Sequence to its own module, add a clean method to Sequence, mak… 

    …e a trim function
    @camillescott
    camillescott committed Sep 8, 2017
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  2. Update trim-low-abund for cython

    @camillescott
    camillescott committed Sep 8, 2017
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  3. remove ReadParser import

    @camillescott
    camillescott committed Sep 8, 2017
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  4. Switch split-paired-reads

    @camillescott
    camillescott committed Sep 8, 2017
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  5. Remove ReadParser from filter abund scripts

    @camillescott
    camillescott committed Sep 8, 2017
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  6. Remove ReadParser from extract paired

    @camillescott
    camillescott committed Sep 8, 2017
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  7. First pass at diginorm screed removal

    @camillescott
    camillescott committed Sep 8, 2017
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  8. Convert diginorm to FastxParser, with exception of odd streaming issu… 

    …e with threads
    @camillescott
    camillescott committed Sep 8, 2017
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  9. First pass unifying consume functions and removing ReadParser from gr… 

    …aphs
    @camillescott
    camillescott committed Sep 8, 2017
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Commits on Sep 14, 2017

  1. Merge branch "master" into "feature/cython_cleanup" [skip ci]

    @standage
    standage committed Sep 14, 2017
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Commits on Sep 18, 2017

  1. Merge branch "master" into feature/cython_cleanup

    @standage
    standage committed Sep 18, 2017
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