[pre-commit.ci] pre-commit autoupdate #58

	name: CI

	on:
	push:
	branches:
	- master
	- dev
	pull_request:
	branches:
	- master
	- dev

	concurrency:
	group: ci-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	pip:
	runs-on: ${{matrix.os}}
	strategy:
	fail-fast: false
	matrix:
	os: ["ubuntu-latest", "macos-latest"]
	python-version: ["3.7", "3.8", "3.9", "3.10"]
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install pbiotools including test dependencies
	run: pip install .[test] --verbose
	- name: Run tests
	run: python -m pytest . -v
	conda:
	runs-on: ${{matrix.os}}
	defaults:
	run:
	shell: bash -l {0}
	strategy:
	fail-fast: false
	matrix:
	os: ["ubuntu-latest", "macos-latest"]
	python-version: ["3.7", "3.8", "3.9", "3.10"]
	steps:
	- uses: actions/checkout@v3
	- name: Create pbiotools conda environment
	uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: ${{ matrix.python-version }}
	auto-update-conda: true
	auto-activate-base: false
	activate-environment: pbiotools
	environment-file: environment.yml
	- name: Display conda env info
	run: \|
	conda info
	conda list
	conda config --show-sources
	conda config --show
	printenv \| sort
	- name: Install pbiotools
	#run: pip install . --no-deps --ignore-installed -vvv
	run: pip install . -vvv
	- name: Run tests
	run: python -m pytest . -v

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