Merge branch 'lkeegan-ci'

dieterich-lab · Mar 3, 2023 · ac58794 · ac58794
2 parents 91dbe33 + d30f31c
commit ac58794
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -27,7 +27,7 @@ jobs:
         uses: conda-incubator/setup-miniconda@v2
         with:
           python-version: ${{ matrix.python-version }}
-          channels: bioconda,conda-forge,defaults
+          channels: conda-forge,bioconda,defaults
           channel-priority: strict
           auto-update-conda: true
           auto-activate-base: false

diff --git a/environment.yml b/environment.yml
@@ -1,13 +1,13 @@
 name: rpbp
 channels:
-  - defaults
   - conda-forge
   - bioconda
+  - defaults
 dependencies:
   - python
   - biopython
   - bowtie2
-  - cmdstanpy
+  - cmdstanpy>=1.0.0
   - dash
   - dash-bio
   - dash-bootstrap-components