runcleaner

by Song Cao, Jun 14, 2019

Clean somaticwrapper and germlinewrapper run

The implementation of gzipping large pindel files

Usage: perl runcleaner.pl --rdir --log --t --q

rdir = full path of the folder holding files for this sequence run (user must provide)

log = full path of the folder for saving log file; usually upper folder of rdir

type = somatic or germline

q = which queue for submitting job; research-hpc, ding-lab, long (default)