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Make the network dataframes as small as possible #54

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dizak opened this issue Jun 29, 2018 · 1 comment
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Make the network dataframes as small as possible #54

dizak opened this issue Jun 29, 2018 · 1 comment

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@dizak
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dizak commented Jun 29, 2018 •
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846797a

Proposed change

All the columns in the KEGG Orthology dataframe beside ORF_ID and ENTRY seem redundant. Not parsing them should be a default action. Stripping down the final interactions dataframe reduces the time of each permutation (during the brute-force permutation test) twice.
@dizak dizak mentioned this issue Aug 23, 2018
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@dizak
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dizak commented Aug 29, 2018

Solved by #62

@dizak dizak closed this as completed Aug 29, 2018
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