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Amend KEGG database parser #8

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dizak opened this issue Apr 25, 2018 · 2 comments
Closed

Amend KEGG database parser #8

dizak opened this issue Apr 25, 2018 · 2 comments
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dizak commented Apr 25, 2018

commit

7d9ab00

Proposed change

Parsing KEGG database works for KEGG Orthology but is still not very reliable. Does not really work for the other KEGG database or works poorly. The main problem is probably a proper way of handling multiline in regex.

@dizak dizak added the update label Apr 25, 2018
@dizak dizak added this to the v0.1.0 milestone Apr 25, 2018
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dizak commented Aug 23, 2018

The KEGG Orthology database approach should probably be different. Using link/genes/KO fetches all the genes and KEGG Organism ID from given KO. That may give more complete information without the overhead #54

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dizak commented Aug 27, 2018

Solved with #59

@dizak dizak closed this as completed Aug 27, 2018
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