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Avoid archiving "Analysis" hierarchy
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as this contained a Analysis/1/Data/BCLConvert/fastq/Reports/RunInfo.xml

Improve doc slightly too.
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dkj committed Jul 20, 2023
1 parent 5eeaae4 commit 8612cf4
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion lib/npg_pipeline/function/run_data_to_irods_archiver.pm
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,7 @@ override 'create' => sub {
q{--include}, q['RunInfo.xml'],
q{--include}, q['[Rr]unParameters.xml'],
q{--include}, q[InterOp],
q{--exclude}, q[Analysis],
q{--id_run}, $self->id_run,
q{--logconf}, $self->conf_file_path('log4perl_publish_illumina.conf');

Expand Down Expand Up @@ -57,7 +58,8 @@ npg_pipeline::function::run_data_to_irods_archiver
=head1 DESCRIPTION
Defines a job for publishing Illumina run data to iRODS.
Defines a job for publishing Illumina's data about a run to iRODS. e.g.
RunParameters.xml and InterOp/
=head1 SUBROUTINES/METHODS
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