Multiple instances of the same feature extractor with different configurations should be possible #39

daxenberger · 2015-06-09T14:04:04Z

Originally reported on Google Code with ID 39

We could e.g. want two "interesting words" FE with two different lists instead of having
to merge the lists.

This is currently not possible, as they read the parameters from the global space and
will both take the same.

Reported by torsten.zesch on 2013-08-07 16:01:42

The text was updated successfully, but these errors were encountered:

daxenberger · 2015-06-09T14:04:05Z

To make this work, we would have to allow for configuring dedicated pairs of FeatureExtractors
and their configuration.
All configuration for FeatureExtractors (and resp. MetaCollectors) should be handled
equally. See also issue 36.

Reported by daxenberger.j on 2013-08-07 16:33:05

daxenberger · 2015-06-09T14:04:05Z

I am not sure anymore that this is actually possible in our current architecture.
Thus closing the issue.

Reported by torsten.zesch on 2014-03-19 08:46:38

Status changed: WontFix

daxenberger · 2015-06-09T14:04:06Z

I came across the same problem today and I think it would be very useful, if you could
call a FeatureExtractor twice (or more times) from the same experiment using different
parameters (one parameter being the name of the feature). This would help to make FeatureExtractors
more generic and keep the specific part to the experiment. In my case, I wanted to
use different resources such as files (as in Torsten's example) or similarity measures
but do the same operations on them.

Reported by lisa.beinborn@gmx.de on 2014-05-27 14:46:11

daxenberger · 2015-06-09T14:04:07Z

As already mentioned above, this would require major changes in the core of the framework.
We'll keep the issue on the agenda, but this will definitely not be resolved before
the next release.

Reported by daxenberger.j on 2014-05-27 14:52:45

Status changed: Accepted

daxenberger · 2015-06-09T14:04:07Z

Reported by daxenberger.j on 2014-06-04 12:34:23

Labels added: Milestone-Release0.7.0

daxenberger · 2015-06-09T14:04:08Z

Reported by daxenberger.j on 2014-08-29 10:03:18

Labels added: Milestone-Release0.8.0
Labels removed: Milestone-Release0.7.0

daxenberger · 2015-06-09T14:04:09Z

Reported by daxenberger.j on 2014-10-29 17:24:00

Blocking: Potential severe problem with ngram meta collectors and extractors #207

daxenberger · 2015-06-09T14:04:09Z

This issue was updated by revision r1277.

- Hackathon intermediate results

Reported by richard.eckart on 2014-12-07 19:45:46

daxenberger · 2015-06-09T14:04:10Z

Reported by daxenberger.j on 2014-12-11 15:28:26

Status changed: Started

daxenberger · 2015-06-09T14:04:11Z

Reported by daxenberger.j on 2014-12-11 15:30:30

Blocking: Named Features Sets #73

daxenberger · 2015-06-09T14:04:12Z

This issue was updated by revision r1447.


adapt ContextMetaCollector to new meta collector structure

Reported by daxenberger.j on 2015-04-10 13:59:34

daxenberger · 2015-06-09T14:04:12Z

This issue was updated by revision r1452.


some fixes to make the demo work

Reported by daxenberger.j on 2015-04-10 16:16:16

daxenberger · 2015-06-09T14:04:13Z

This issue was updated by revision r1458.


corrections in ValidityCheckTask

Reported by daxenberger.j on 2015-04-11 07:10:23

daxenberger · 2015-06-09T14:04:14Z

This issue was updated by revision r1459.


updating proof-of-concept demo (currently broken)

Reported by daxenberger.j on 2015-04-11 07:26:15

daxenberger · 2015-06-09T14:04:14Z

Remaining TODOs:

- demo is broken (topK for all FE instances is created in initialize())
- names of FEs are not used in DISCRIMINATORS.txt

Reported by daxenberger.j on 2015-04-11 07:28:53

Horsmann · 2015-11-04T13:44:07Z

how far is this issue? Is this usable yet?

Horsmann · 2015-11-13T14:26:46Z

@daxenberger ping :)

daxenberger · 2015-11-13T16:27:00Z

We have implemented a prototype of this, but not merged it into the trunk yet.
If you want to play with it, have a look at the code in the issue-39 branch, in particular into the examples/single/document/BasicTwentyNewsgroupsDemo class.

Horsmann · 2016-07-31T14:37:39Z

@reckart I have some import resolution errors in a demo case that uses an ExternalResourceDescription as parameter for a feature extractor.

Any idea for the origin of the exception?

2016-07-31 16:33:20 DEBUG DefaultLoggingService:43 - [Evaluation-TwentyNewsgroupsTrainTest-b7e16165-572b-11e6-a228-e98b49b76be2] Problem stack trace:
org.dkpro.lab.storage.UnresolvedImportException: 
 -Unable to resolve import of task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
 -Unable to resolve import of task [org.dkpro.tc.weka.task.WekaTestTask-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] has never been executed.; nested exception is org.dkpro.lab.storage.UnresolvedImportException: Unable to resolve import of task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
    at org.dkpro.lab.engine.impl.BatchTaskEngine.executeConfiguration(BatchTaskEngine.java:261)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.run(BatchTaskEngine.java:133)
    at org.dkpro.lab.engine.impl.DefaultTaskExecutionService.run(DefaultTaskExecutionService.java:52)
    at org.dkpro.lab.Lab.run(Lab.java:107)
    at org.dkpro.tc.examples.single.pair.WekaExternalResourceDemo.runTrainTest(WekaExternalResourceDemo.java:134)
    at org.dkpro.tc.examples.single.pair.WekaExternalResourceDemo.main(WekaExternalResourceDemo.java:80)
Caused by: org.dkpro.lab.storage.UnresolvedImportException: Unable to resolve import of task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
    at org.dkpro.lab.engine.impl.BatchTaskEngine$ScopedTaskContext.resolve(BatchTaskEngine.java:521)
    at org.dkpro.lab.engine.impl.DefaultTaskContextFactory.resolveImports(DefaultTaskContextFactory.java:141)
    at org.dkpro.lab.engine.impl.DefaultTaskContextFactory.createContext(DefaultTaskContextFactory.java:97)
    at org.dkpro.lab.uima.engine.simple.SimpleExecutionEngine.run(SimpleExecutionEngine.java:77)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.runNewExecution(BatchTaskEngine.java:329)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.executeConfiguration(BatchTaskEngine.java:234)
    ... 5 more
Caused by: org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
    at org.dkpro.lab.engine.impl.ImportUtil.createContextNotFoundException(ImportUtil.java:124)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.getLatestExecution(BatchTaskEngine.java:306)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.access$000(BatchTaskEngine.java:64)
    at org.dkpro.lab.engine.impl.BatchTaskEngine$ScopedTaskContext.resolve(BatchTaskEngine.java:518)
    ... 10 more
2016-07-31 16:33:20 INFO  DefaultLoggingService:33 - [Evaluation-TwentyNewsgroupsTrainTest-b7e16165-572b-11e6-a228-e98b49b76be2] Shut down task
Exception in thread "main" org.dkpro.lab.storage.UnresolvedImportException: 
 -Unable to resolve import of task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
 -Unable to resolve import of task [org.dkpro.tc.weka.task.WekaTestTask-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] has never been executed.; nested exception is org.dkpro.lab.storage.UnresolvedImportException: Unable to resolve import of task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
    at org.dkpro.lab.engine.impl.BatchTaskEngine.executeConfiguration(BatchTaskEngine.java:261)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.run(BatchTaskEngine.java:133)
    at org.dkpro.lab.engine.impl.DefaultTaskExecutionService.run(DefaultTaskExecutionService.java:52)
    at org.dkpro.lab.Lab.run(Lab.java:107)
    at org.dkpro.tc.examples.single.pair.WekaExternalResourceDemo.runTrainTest(WekaExternalResourceDemo.java:134)
    at org.dkpro.tc.examples.single.pair.WekaExternalResourceDemo.main(WekaExternalResourceDemo.java:80)
Caused by: org.dkpro.lab.storage.UnresolvedImportException: Unable to resolve import of task [org.dkpro.tc.core.task.ExtractFeaturesTask-Test-TwentyNewsgroupsTrainTest] pointing to [task-latest://org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest/output]; nested exception is org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
    at org.dkpro.lab.engine.impl.BatchTaskEngine$ScopedTaskContext.resolve(BatchTaskEngine.java:521)
    at org.dkpro.lab.engine.impl.DefaultTaskContextFactory.resolveImports(DefaultTaskContextFactory.java:141)
    at org.dkpro.lab.engine.impl.DefaultTaskContextFactory.createContext(DefaultTaskContextFactory.java:97)
    at org.dkpro.lab.uima.engine.simple.SimpleExecutionEngine.run(SimpleExecutionEngine.java:77)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.runNewExecution(BatchTaskEngine.java:329)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.executeConfiguration(BatchTaskEngine.java:234)
    ... 5 more
Caused by: org.dkpro.lab.storage.TaskContextNotFoundException: Task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest] has never been executed.
    at org.dkpro.lab.engine.impl.ImportUtil.createContextNotFoundException(ImportUtil.java:124)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.getLatestExecution(BatchTaskEngine.java:306)
    at org.dkpro.lab.engine.impl.BatchTaskEngine.access$000(BatchTaskEngine.java:64)
    at org.dkpro.lab.engine.impl.BatchTaskEngine$ScopedTaskContext.resolve(BatchTaskEngine.java:518)
    ... 10 more

reckart · 2016-07-31T14:57:19Z

@Horsmann try increasing the logging level so that lab prints the actual discriminator values that it compares and whether they match or not.

Horsmann · 2016-07-31T15:42:14Z

@reckart

2016-07-31 17:37:15 DEBUG DataBinder:446 - DataBinder requires binding of required fields [weightingTf,normalization]
2016-07-31 17:37:15 DEBUG BeanUtils:456 - No property editor [dkpro.similarity.algorithms.lexical.string.CosineSimilarity$WeightingModeTfEditor] found for type dkpro.similarity.algorithms.lexical.string.CosineSimilarity$WeightingModeTf according to 'Editor' suffix convention
2016-07-31 17:37:15 DEBUG BeanUtils:456 - No property editor [dkpro.similarity.algorithms.lexical.string.CosineSimilarity$NormalizationModeEditor] found for type dkpro.similarity.algorithms.lexical.string.CosineSimilarity$NormalizationMode according to 'Editor' suffix convention
2016-07-31 17:37:15 DEBUG DataBinder:446 - DataBinder requires binding of required fields [size]
2016-07-31 17:37:15 DEBUG DataBinder:446 - DataBinder requires binding of required fields [segmentFeaturePath,featureExtractorName]
2016-07-31 17:37:15 DEBUG DataBinder:446 - DataBinder requires binding of required fields [outputDirectory,addInstanceId,featureFilters,dataWriterClass,learningMode,featureMode,developerMode,applyWeighting,isTesting,featureStoreClass]
2016-07-31 17:37:15 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Initialized task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest]
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|featureFilters]: []
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|filesRoot]: null
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|files_training]: null
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|files_validation]: null
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|learningMode]: singleLabel
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|featureMode]: pair
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|featureStore]: null
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|developerMode]: false
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|applyWeighting]: false
2016-07-31 17:37:15 DEBUG ExtractFeaturesTask:414 - Found Discriminator [org.dkpro.tc.core.task.ExtractFeaturesTask|featureSet]: [org.dkpro.tc.features.pair.similarity.SimilarityPairFeatureExtractor| textSimilarityResource, org.apache.uima.fit.internal.ExtendedExternalResourceDescription_impl: 
description = NULL
implementationName = NULL
name = dkpro.similarity.algorithms.lexical.uima.string.CosineSimilarityResource-0
------cut------
2016-07-31 17:37:15 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Progress de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasReader 5/5 file (src/main/resources/data/twentynewsgroups/bydate-train/alt.atheism/49960.txt src/main/resources/data/twentynewsgroups/bydate-train/comp.graphics/37913.txt)
2016-07-31 17:37:16 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Completing task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest]
2016-07-31 17:37:16 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Running reports for task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest]
2016-07-31 17:37:16 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Starting report [org.dkpro.lab.uima.reporting.UimaDescriptorsReport] (1/1)
2016-07-31 17:37:16 DEBUG FileSystemStorageService:240 - Storing to: target/results/WekaExternalResourceDemo/org.dkpro.lab/repository/ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919/AnalysisEngineDescription.xml.html
2016-07-31 17:37:16 DEBUG FileSystemStorageService:240 - Storing to: target/results/WekaExternalResourceDemo/org.dkpro.lab/repository/ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919/CollectionReaderDescription.xml.html
2016-07-31 17:37:16 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Report complete [org.dkpro.lab.uima.reporting.UimaDescriptorsReport] (1/1)
2016-07-31 17:37:16 DEBUG FileSystemStorageService:240 - Storing to: target/results/WekaExternalResourceDemo/org.dkpro.lab/repository/ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919/METADATA.txt
2016-07-31 17:37:16 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Completed task [org.dkpro.tc.core.task.ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest]
2016-07-31 17:37:16 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Shut down task
2016-07-31 17:37:16 DEBUG ImportUtil:68 - No value match: [org.dkpro.tc.core.task.MetaInfoTask|featureSet] [^[org.dkpro.tc.features.pair.similarity.SimilarityPairFeatureExtractor| textSimilarityResource, org.apache.uima.fit.internal.ExtendedExternalResourceDescription_impl: 
description = NULL
implementationName = NULL
name = dkpro.similarity.algorithms.lexical.uima.string.CosineSimilarityResource-0
resourceSpecifier = org.apache.uima.resource.impl.CustomResourceSpecifier_impl: 
parameters = Array{0: org.apache.uima.resource.impl.Parameter_impl:

The toString() of the ExternalResourceDescription that is passes as parameters makes the debug output endlessly verbose

I think this line says it doesn't find the feature

2016-07-31 17:37:16 INFO  DefaultLoggingService:33 - [ExtractFeaturesTask-Train-TwentyNewsgroupsTrainTest-a84a5c0b-5734-11e6-9ffd-819de4a89919] Shut down task
2016-07-31 17:37:16 DEBUG ImportUtil:68 - No value match: [org.dkpro.tc.core.task.MetaInfoTask|featureSet] [^[org.dkpro.tc.features.pair.similarity.SimilarityPairFeatureExtractor| textSimilarityResource, org.apache.uima.fit.internal.ExtendedExternalResourceDescription_impl: 
--------cut-----

reckart · 2016-07-31T15:55:30Z

Since all the features are now discriminable (right?) the discriminators should no longer contain the full specified text, no?

Horsmann · 2016-07-31T15:58:05Z

Well, the discriminator uses also the parameters to have a full feature description and not just the name of the feature class e.g. LuceneNgram, ngramMin, 1, ngramMax, 3
In case the parameter is an externalResourceDescription it just calls toString() on it. This is why I get the whole resource text yet again.

reckart · 2016-07-31T16:06:46Z

Ok, that makes it verbose ;)

Maybe you don't keep a strict ordering when writing out your discriminator values? Mind that discriminators are compared based on their string values. If you have any non-determinism (e.g. using Sets or HashMaps which don't guarantee an order) you can get such effects.

Horsmann · 2016-07-31T16:25:48Z

ok. I capture the ExtResDesc when generating the toString() value, parse it and return its name. This solves the problem. Those endlessly long texts seem to be quite a problem. Now it works.

daxenberger assigned dkpro Jun 9, 2015

daxenberger added Type-Enhancement Priority-Medium labels Jun 9, 2015

This was referenced Jun 9, 2015

Named Features Sets #73

Closed

Potential severe problem with ngram meta collectors and extractors #207

Closed

reckart modified the milestone: 0.8.0 Aug 8, 2015

reckart removed the Milestone-Release0.8.0 label Aug 8, 2015

reckart added enhancement and removed Type-Enhancement labels Sep 6, 2015

Horsmann mentioned this issue Dec 30, 2015

Introduce a single context-feature #292

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Issue #39: toString() for TcFeature

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Issue #39: renamed class

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Multiple instances of the same feature extractor with different configurations should be possible #39

Multiple instances of the same feature extractor with different configurations should be possible #39

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Multiple instances of the same feature extractor with different configurations should be possible #39

Multiple instances of the same feature extractor with different configurations should be possible #39

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