suite2p_analysis_py

Working with suite2p segmented functional images

Modules containing functions for single/multi-cellular analysis of seizure data from suite2p output ipynotebooks provide examples of how modules are used

Name		Name	Last commit message	Last commit date
Latest commit History 47 Commits
.ipynb_checkpoints		.ipynb_checkpoints
__pycache__		__pycache__
-.o		-.o
CCM.ipynb		CCM.ipynb
CCM.py		CCM.py
IS.py		IS.py
KuramotoSimulation_PyDSTool.py		KuramotoSimulation_PyDSTool.py
Misc1.ipynb		Misc1.ipynb
Misc2.ipynb		Misc2.ipynb
Misc3.ipynb		Misc3.ipynb
Misc4.ipynb		Misc4.ipynb
Misc5.ipynb		Misc5.ipynb
Misc6.ipynb		Misc6.ipynb
Misc7.ipynb		Misc7.ipynb
Mutant_analysis.ipynb		Mutant_analysis.ipynb
README.md		README.md
S_conn.ipynb		S_conn.ipynb
admin_functions.py		admin_functions.py
aswin_IS.txt		aswin_IS.txt
avalanches.ipynb		avalanches.ipynb
avalanches.py		avalanches.py
avfig2.ipynb		avfig2.ipynb
avfig3.ipynb		avfig3.ipynb
avfig4.ipynb		avfig4.ipynb
avfig5.ipynb		avfig5.ipynb
avfig6.ipynb		avfig6.ipynb
avfig_supp.ipynb		avfig_supp.ipynb
cde_net_ictals.ipynb		cde_net_ictals.ipynb
cells.ipynb		cells.ipynb
cells.py		cells.py
classify.ipynb		classify.ipynb
detect.ipynb		detect.ipynb
distribution_compare.py		distribution_compare.py
extract.py		extract.py
extract_tail_angle.ipynb		extract_tail_angle.ipynb
fish_net.ipynb		fish_net.ipynb
fish_net_functions.py		fish_net_functions.py
fish_net_functions.pyc		fish_net_functions.pyc
graveyard.py		graveyard.py
kuramoto1.py		kuramoto1.py
matts_matrix_functions.py		matts_matrix_functions.py
matts_network_functions.py		matts_network_functions.py
net_dimensionality.ipynb		net_dimensionality.ipynb
net_dyn.ipynb		net_dyn.ipynb
net_mod.ipynb		net_mod.ipynb
network.ipynb		network.ipynb
network_mod.py		network_mod.py
phases.png		phases.png
plot.py		plot.py
populations.ipynb		populations.ipynb

dmnburrows/suite2p_analysis_py

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