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Cleanup and fix curved grid #41

Merged
merged 25 commits into from
Mar 12, 2020
Merged

Cleanup and fix curved grid #41

merged 25 commits into from
Mar 12, 2020

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dougshidong
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@dougshidong
Move functional derivative allocation to function.
84c164a
@dougshidong
Change private to protected members for Functional
4017208
@dougshidong
Make TargetFunctional derived from Functional.
db55e96 
A lot of re-used functions.
@dougshidong
Add allocate_dIdX to avoid repetition.
6751437
@dougshidong
Make FreeStreamInitialConditions class in Physics.
7983e2f 
Used to copy paste it in the test cases. Just make it part of the
Physics namespace.
@dougshidong
Remove extraneous comment.
78d7142
@dougshidong
Move grid classes to another folder/library.
b5ae041
@dougshidong
Remove useless includes.
4ce91d8
@dougshidong
Rename folder grid to mesh.
3bc6240
@dougshidong
Fix weird output number due to invalid cycle.
374658e
@dougshidong
Rename vector to position_vector.
de0c05e 
To avoid weird coloring.
@dougshidong
Working Gaussian Bump grid.
63f9934 
Move the Gaussian bump grid generation out of the testing and into their
own file/folder.
@dougshidong
Allow MappingManifold to be used with DG.
d4eba2d 
Will not work for dRdX and d2R when using MappingManifold.
@dougshidong
Fix HighOrderGrid initial curving.
3c73741 
It used to only curve the boundary elements using MappingQ. Now with
MappingQGeneric, it will curve all the elements.
@dougshidong
Clean dg.cpp
4d8b38d
@dougshidong
Clean gaussian_bump.cpp
9250c15
@dougshidong
Use straight-sided grid for compare_rhs
b8c0f67 
Uncomment the gaussian bump for a curved grid.
@dougshidong
Update cylinder case parameters.
b66855d
@dougshidong
Allow compare_rhs to use curved gaussian bump grid
a99a96b
@dougshidong
Clearer residual message.
65ef345
@dougshidong
Comment mix exact and polynomial geo.
8568038 
Some hard-coding to mix exact and polynomial geometry representation.

Note that an exact representation won't be correctly differentiated.
@dougshidong
Fix residual output.
4038aaf
@dougshidong
Fix the Gaussian bump.
98c0abe
@dougshidong
More cleaning
9b46a23
@dougshidong
Add documentation to Gaussian bump grid.
ac3cc34
@dougshidong dougshidong merged commit 5d16114 into master Mar 12, 2020
dougshidong pushed a commit that referenced this pull request May 19, 2022
Debugged everything, all tests run now.
97b3b40 
Test project /home/abtinameri/Desktop/thesis/PHiLiP/build
      Start  1: 1D_numerical_flux_conservation
 1/42 Test  #1: 1D_numerical_flux_conservation ..................................   Passed    0.42 sec
      Start  2: 2D_numerical_flux_conservation
 2/42 Test  #2: 2D_numerical_flux_conservation ..................................   Passed    0.45 sec
      Start  3: 3D_numerical_flux_conservation
 3/42 Test  #3: 3D_numerical_flux_conservation ..................................   Passed    0.40 sec
      Start  4: 1D_jacobian_matrix_regression
 4/42 Test  #4: 1D_jacobian_matrix_regression ...................................   Passed    0.42 sec
      Start  5: 2D_jacobian_matrix_regression
 5/42 Test  #5: 2D_jacobian_matrix_regression ...................................   Passed    0.47 sec
      Start  6: 3D_jacobian_matrix_regression
 6/42 Test  #6: 3D_jacobian_matrix_regression ...................................   Passed    2.48 sec
      Start  7: 1D_euler_convert_primitive_conservative
 7/42 Test  #7: 1D_euler_convert_primitive_conservative .........................   Passed    0.22 sec
      Start  8: 2D_euler_convert_primitive_conservative
 8/42 Test  #8: 2D_euler_convert_primitive_conservative .........................   Passed    0.21 sec
      Start  9: 3D_euler_convert_primitive_conservative
 9/42 Test  #9: 3D_euler_convert_primitive_conservative .........................   Passed    0.48 sec
      Start 10: 1D_euler_manufactured_solution_source
10/42 Test #10: 1D_euler_manufactured_solution_source ...........................   Passed    0.21 sec
      Start 11: 2D_euler_manufactured_solution_source
11/42 Test #11: 2D_euler_manufactured_solution_source ...........................   Passed    0.25 sec
      Start 12: 3D_euler_manufactured_solution_source
12/42 Test #12: 3D_euler_manufactured_solution_source ...........................   Passed    0.51 sec
      Start 13: 1D_euler_convective_jacobian
13/42 Test #13: 1D_euler_convective_jacobian ....................................   Passed    0.21 sec
      Start 14: 2D_euler_convective_jacobian
14/42 Test #14: 2D_euler_convective_jacobian ....................................   Passed    0.23 sec
      Start 15: 3D_euler_convective_jacobian
15/42 Test #15: 3D_euler_convective_jacobian ....................................   Passed    0.87 sec
      Start 16: 1D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION
16/42 Test #16: 1D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION .....................   Passed    0.52 sec
      Start 17: 2D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION
17/42 Test #17: 2D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION .....................   Passed    4.98 sec
      Start 18: MPI_2D_ADVECTION_EXPLICIT_MANUFACTURED_SOLUTION
18/42 Test #18: MPI_2D_ADVECTION_EXPLICIT_MANUFACTURED_SOLUTION .................   Passed  284.29 sec
      Start 19: MPI_2D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION
19/42 Test #19: MPI_2D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION .................   Passed    3.93 sec
      Start 20: MPI_3D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION
20/42 Test #20: MPI_3D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION .................   Passed    9.86 sec
      Start 21: 1D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION_STRONG
21/42 Test #21: 1D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION_STRONG ..............   Passed    0.59 sec
      Start 22: 2D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION_STRONG
22/42 Test #22: 2D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION_STRONG ..............   Passed    7.40 sec
      Start 23: MPI_3D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION_STRONG
23/42 Test #23: MPI_3D_ADVECTION_IMPLICIT_MANUFACTURED_SOLUTION_STRONG ..........   Passed   41.23 sec
      Start 24: 1D_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION
24/42 Test #24: 1D_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION .....................   Passed    0.53 sec
      Start 25: 2D_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION
25/42 Test #25: 2D_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION .....................   Passed    1.86 sec
      Start 26: MPI_3D_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION
26/42 Test #26: MPI_3D_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION .................   Passed   29.47 sec
      Start 27: 1D_CONVECTION_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION
27/42 Test #27: 1D_CONVECTION_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION ..........   Passed    0.58 sec
      Start 28: 2D_CONVECTION_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION
28/42 Test #28: 2D_CONVECTION_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION ..........   Passed    1.94 sec
      Start 29: MPI_3D_CONVECTION_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION
29/42 Test #29: MPI_3D_CONVECTION_DIFFUSION_IMPLICIT_MANUFACTURED_SOLUTION ......   Passed   28.02 sec
      Start 30: 1D_ADVECTION_VECTOR_VALUED_IMPLICIT_MANUFACTURED_SOLUTION
30/42 Test #30: 1D_ADVECTION_VECTOR_VALUED_IMPLICIT_MANUFACTURED_SOLUTION .......   Passed    0.57 sec
      Start 31: 2D_ADVECTION_VECTOR_VALUED_IMPLICIT_MANUFACTURED_SOLUTION
31/42 Test #31: 2D_ADVECTION_VECTOR_VALUED_IMPLICIT_MANUFACTURED_SOLUTION .......   Passed    9.53 sec
      Start 32: MPI_3D_ADVECTION_VECTOR_VALUED_IMPLICIT_MANUFACTURED_SOLUTION
32/42 Test #32: MPI_3D_ADVECTION_VECTOR_VALUED_IMPLICIT_MANUFACTURED_SOLUTION ...   Passed   17.23 sec
      Start 33: 1D_BURGERS_INVISCID_IMPLICIT_MANUFACTURED_SOLUTION
33/42 Test #33: 1D_BURGERS_INVISCID_IMPLICIT_MANUFACTURED_SOLUTION ..............   Passed    0.54 sec
      Start 34: 1D_burgers_energy_stability
34/42 Test #34: 1D_burgers_energy_stability .....................................   Passed  211.12 sec
      Start 35: 2D_advection_explicit_periodic
35/42 Test #35: 2D_advection_explicit_periodic ..................................   Passed  170.45 sec
      Start 36: 1D_EULER_LAXFRIEDRICHS_MANUFACTURED_SOLUTION
36/42 Test #36: 1D_EULER_LAXFRIEDRICHS_MANUFACTURED_SOLUTION ....................   Passed    1.13 sec
      Start 37: 2D_EULER_LAXFRIEDRICHS_MANUFACTURED_SOLUTION
37/42 Test #37: 2D_EULER_LAXFRIEDRICHS_MANUFACTURED_SOLUTION ....................   Passed   29.69 sec
      Start 38: MPI_2D_EULER_LAXFRIEDRICHS_MANUFACTURED_SOLUTION
38/42 Test #38: MPI_2D_EULER_LAXFRIEDRICHS_MANUFACTURED_SOLUTION ................   Passed   22.17 sec
      Start 39: 1D_EULER_ROE_MANUFACTURED_SOLUTION
39/42 Test #39: 1D_EULER_ROE_MANUFACTURED_SOLUTION ..............................   Passed    1.13 sec
      Start 40: MPI_2D_EULER_ROE_MANUFACTURED_SOLUTION
40/42 Test #40: MPI_2D_EULER_ROE_MANUFACTURED_SOLUTION ..........................   Passed   14.58 sec
      Start 41: MPI_2D_EULER_INTEGRATION_CYLINDER
41/42 Test #41: MPI_2D_EULER_INTEGRATION_CYLINDER ...............................   Passed  167.23 sec
      Start 42: MPI_2D_EULER_INTEGRATION_GAUSSIAN_BUMP
42/42 Test #42: MPI_2D_EULER_INTEGRATION_GAUSSIAN_BUMP ..........................   Passed  245.55 sec

100% tests passed, 0 tests failed out of 42
dougshidong added a commit that referenced this pull request May 19, 2022
@dougshidong
Merge pull request #41 from dougshidong/cleanup
ac100f4 
Cleanup and fix curved grid
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