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22 Open 32 Closed
22 Open 32 Closed
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Issues list

Spurious metacell
#65 opened May 6, 2024 by yxsee
The data cannot be downloaded
#63 opened Apr 24, 2024 by cfzgg
Circular import and GPU version
#62 opened Apr 18, 2024 by GLking123
Handling metacell creation for rare cell types (<< 75 cells)
#61 opened Apr 15, 2024 by uqzqiao
maxFragmentLength=147
#60 opened Apr 5, 2024 by Aya-Balbaa
Custom Neighborhood Graph for Metacells
#59 opened Apr 1, 2024 by shahrozeabbas
No speed increase was observed when use_gpu=True
#58 opened Mar 28, 2024 by liziyu-000
1
Aggregation of expression data ends up in matrix filled with NaN's
#57 opened Jan 30, 2024 by zvittorio
1
Scale or not scale be more suitable for computation of SEACells?
#56 opened Jan 4, 2024 by NPTL1201
wonder why the @parm ceiling can be set to 10^9
#54 opened Nov 2, 2023 by chenc327
[Question] Algorithm for PWM computation
#53 opened Oct 26, 2023 by josephineyates
Fail to install seacells via conda due to conflicts in environment.yaml
#52 opened Oct 5, 2023 by ChangSuBiostats
2
cell-cell affinity matrix
#49 opened Jul 15, 2023 by ytliu01
1
Reproducibility issue
#48 opened Jul 8, 2023 by evaham1
2
Renaming the Seacells
#46 opened Jun 7, 2023 by Gavin-Lijy
1
Many cells have zero non-trivial (>0.1) assignments
#43 opened May 30, 2023 by simozhou
1
Issue with model.initialize_archetypes()
#41 opened May 18, 2023 by iamsalil
4
Way too strict dependency pins
#39 opened May 5, 2023 by Zethson
3
MemoryError when fitting model.fit
#34 opened Apr 3, 2023 by tatyana-perlova
10
model.fit hangs indefinitely
#18 opened Jul 25, 2022 by smorabit
12
Local paths in requirements.txt
#15 opened Jul 6, 2022 by maxim-h
@sitarapersad
3
Compute gene scores without GC content annotation
#12 opened May 19, 2022 by marie3003
@sitarapersad
5
ProTip! no:milestone will show everything without a milestone.