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NAMESPACE
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NAMESPACE
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export(NetGSA,
NetGSAq,
prepareAdjMat,
netEst.dir,
netEst.undir,
bic.netEst.undir,
obtainEdgeList,
plot.NetGSA,
zoomPathway,
formatPathways)
import(data.table)
import(glassoFast, Matrix)
importFrom("stats", "coef", "cov", "lm", "p.adjust", "pf", "pt",
"qnorm", "residuals", "sd", "setNames")
importFrom("utils", "read.csv")
importFrom("quadprog","solve.QP")
importFrom("corpcor", "pseudoinverse")
importFrom("rlang",".data")
importFrom("magrittr", "%>%")
importFrom("graph","subGraph")
importFrom("graph","nodes")
importFrom("graphite", "pathwayGraph")
importFrom("graphite", "convertIdentifiers")
importFrom("grDevices", "as.raster", "colorRamp", "colorRampPalette", "rgb")
importFrom("graphics", "layout", "mtext", "par", "plot.new", "rasterImage", "text")
useDynLib(netgsa)
import(RcppEigen)
importFrom(Rcpp, evalCpp)
S3method(plot, NetGSA)