Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

In blobtools view tabular output, what does .c indicate? #25

Closed
sujaikumar opened this issue Jul 25, 2016 · 1 comment
Closed

In blobtools view tabular output, what does .c indicate? #25

sujaikumar opened this issue Jul 25, 2016 · 1 comment

Comments

@sujaikumar
Copy link
Contributor

Someone asked this because it wasn't clear in the README (or in the output)

Columns like phylum.c or order.c are not described properly on the github page, but they show the confusion-index - how many other taxa did it hit at that tax level (eg Phylum).
None indicates no hit
0 indicates no confusion (all hits were to one phylum, or whichever tax-level was chosen)
1 indicates one other phylum was hit
2 indicates 2 other phyla were hit, and so on

Can you please add this in the README or in the help text of blobtools view? Thanks!

@DRL
Copy link
Owner

DRL commented Jul 26, 2016

I am in the process of updating the documentation. Will add this.

cheers,

dom

@DRL DRL closed this as completed Jul 26, 2016
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants