Releases: dutchconnectomelab/CATO
Releases · dutchconnectomelab/CATO
CATO v3.2.2
Notable changes
- Add pipeline add-on for COMMIT streamline filtering (#30).
- Add compatibility for complex vox2ras matrices (#33).
- Improve error messages (#29 and #32).
Full Changelog: v3.2.1...v3.2.2
CATO v3.2.1
Notable changes
- Fixes fMRI bandpass filter artefacts at the beginning and end of the filtered rs-fMRI time series.
Full Changelog: v3.2.0...v3.2.1
CATO v3.2.0
Notable changes
- Introduces a test framework for continuous integration.
- Lets users specify the functional connectivity measure (e.g. Pearson correlations or Pearson partial correlations).
- Preprocessing scripts are now compatible with FreeSurfer version 7.
- Removes dependencies on FreeSurfer and FSL in the MATLAB functions. FreeSurfer and FSL are now only used in the preprocessing and parcellation scripts that are provided by the user.
- Fixes various bugs (e.g. in the readTrk function, the iRESTORE threshold assistant).
- Improves various features (e.g. error handling and the check on the toolboxes installed in MATLAB).
Full Changelog: https://github.com/dutchconnectomelab/CATO/commits/v3.2.0
CATO v3.2.0-beta
Notable changes
- Introduces a test framework for continuous integration.
- Lets users specify the functional connectivity measure (e.g. Pearson correlations or Pearson partial correlations).
- Preprocessing scripts are now compatible with FreeSurfer version 7.
- Removes dependencies on FreeSurfer and FSL in the MATLAB functions. FreeSurfer and FSL are now only used in the preprocessing and parcellation scripts that are provided by the user.
- Fixes various bugs (e.g. in the readTrk function, the iRESTORE threshold assistant).
- Improves various features (e.g. error handling and the check on the toolboxes installed in MATLAB).
Full Changelog: https://github.com/dutchconnectomelab/CATO/commits/v3.2.0-beta
CATO v3.1.2
Original release date: 28 May 2021
Notable changes
- Fixes minor issue that MATLAB utilized all available computational threads, which is undesirable when running multiple instances of CATO in parallel. This minor patch introduces the parameter maxNumberCompThreads (default = 1) that lets the user set the maximum number of used computational threads.
CATO v3.1.1
Original release date: 22 March 2021
Notable changes
- Fixes minor issue that caused in some configurations a “non-existent field” error. This is a minor patch does not affect any MRI processing. This error can also be fixed by adding a variable that specifies the lutFile in the collect_region_properties step in the configuration file:
"collect_region_properties":{
"lutFile": "TEMPLATESDIR/TEMPLATE/TEMPLATE.annot.ctab"
}
CATO v3.1.0
Original release date: 16 March 2021
Notable changes
- Memory usage is reduced in the diffusion reconstruction step when correcting for gradient nonlinearities.
- Fixes an issue with the lausanne parcellations that nodes are incorrectly ordered and labeled. This issue affected only version 3.0 and the lausanne120, lausanne250 and lausanne500 parcellations (the Desikan-Killiany, aparc, parcellation is not affected).
- Fiber tracker seeds are now better distributed and compatible with high-quality DWI data.
- The CSD and DTI diffusion reconstruction methods are further improved to give better diffusion profile reconstructions.
CATO v3.0.0
First public release of CATO.