Popular repositories Loading

1. cNMF cNMF Public

   Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

   Jupyter Notebook 256 57

2. scsim scsim Public

   Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells and cells with shared gene-expression programs.

   Python 24 7

3. pyWNN pyWNN Public

   Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)

   Jupyter Notebook 10 2

4. SC-Ebola SC-Ebola Public

   Analysis scripts used in the analysis of Seq-Well and CyTOF datasets of Ebola virus infected PBMCs

   Jupyter Notebook 5 1

5. lassa_fever_gwas lassa_fever_gwas Public

   Jupyter notebooks and helper scripts for the Sabeti Lab Lassa Fever GWAS

   Jupyter Notebook 3 1

6. dropSeqPipe-dak dropSeqPipe-dak Public

   run dropseq - slight modifications from original dropSeqPipe

   Python 2