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Run Black, flake8, and isort via tox.ini (eiffel-community#294)
We add three commonly used linters and code formatters; Black, flake8, and isort. Together they make sure all Python code is consistently formatted and has a reasonably consistent style in other aspects. All code has been adjusted to satisfy these programs. Of the flake8 corrections made, one was a rather subtle shadowing of the json module import in a loop variable. The variable was renamed to better describe what it contains.
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