Dra williams patch 1

docs/src/acknowledgements.md

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+# Acknowledgements
+
+Papers that result from e-MERLIN observations should carry the standard acknowledgement:
+"e-MERLIN is a National Facility operated by the University of Manchester at Jodrell Bank Observatory on behalf of STFC, part of UK Research and Innovation." 
+
+Please cite the e-MERLIN CASA Pipeline (eMCP) in any resulting publications of this data: https://ui.adsabs.harvard.edu/abs/2021ascl.soft09006M/abstract
+
+Papers that are funded by the EC* should also carry the following acknowledgement(s):
+"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 101004719."
+
+"This [infrastructure] participates in a project that has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101004719."
+
+*EC Criteria can be found at: https://www.radionet-eu.org/fp6/tna/index.html

docs/src/examples.md

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-TBD
+Quick start
+=====
+
+.. _quickstart:
+
+If you have received calibrated data from the observatory and you want to refine the calibration, you can:
+
+.. code-block:: console
+
+   (.venv) $ casa -c eMERLIN_CASA_pipeline/eMERLIN_CASA_pipeline.py -r calibration
+
+
+
+Additional usage instructions
+------------------
+
+For a normal pipeline execution and assuming you have a ``inputs.ini`` file, and you have extracted the pipeline, you can:
+
+.. code-block:: console
+
+   (.venv) $ casa -c /path/to/pipeline/eMERLIN_CASA_pipeline.py 
+
+To run the parallelized version using MPI in CASA you can use:
+
+.. code-block:: console
+
+   (.venv) $ mpicasa -n <num_cores> -c eMERLIN_CASA_pipeline/eMERLIN_CASA_pipeline.py
+
+
+Optional arguments
+------------------
+
+If you have want to run individual tasks, you can type them in:
+
+.. code-block:: console
+
+   (.venv) $ casa -c eMERLIN_CASA_pipeline/eMERLIN_CASA_pipeline.py -r first_images
+
+To exclude tasks use the ``-s`` parameter:
+
+.. code-block:: console
+
+   (.venv) $ casa -c eMERLIN_CASA_pipeline/eMERLIN_CASA_pipeline.py -r calibration -s first_images
+
+