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Implementation of LET modifying objectives #706

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Implementation of LET modifying objectives #706

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Commits on Nov 21, 2023

  1. Dirty dose calculation and objectives 

    Dirty dose is calculated test wise in matRad_returnDirtyandCleanDose

To implement dirty dose in matRad there are matRad_calcLETmask and matRad_calcDirtyDose

otherwise there are new dirty dose objectives in an extra DirtyDoseObjectives folder
    @lisaseckler
    lisaseckler committed Nov 21, 2023
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Commits on Dec 13, 2023

  1. LET Objectives 

    Changes in dirty dose objectives and two more Objectives: mLETDose and LETd
    @lisaseckler
    lisaseckler committed Dec 13, 2023
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  2. Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad in… 

    …to dev_varRBErobOpt
    @lisaseckler
    lisaseckler committed Dec 13, 2023
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Commits on Dec 20, 2023

  1. Test change

    @lisaseckler
    lisaseckler committed Dec 20, 2023
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Commits on Dec 21, 2023

  1. LETd Objective 

    changes in LETd Objectives
    @lisaseckler
    lisaseckler committed Dec 21, 2023
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Commits on Jan 11, 2024

  1. Objective Variance Implementation 

    cluster variance for dirty dose, dose and LETd + changes in LETd Projection
    @lisaseckler
    lisaseckler committed Jan 11, 2024
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Commits on Jan 22, 2024

  1. LET experiments for PTCOG

    @lisaseckler
    lisaseckler committed Jan 22, 2024
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Commits on Jan 26, 2024

  1. Cleaning branch

    @lisaseckler
    lisaseckler committed Jan 26, 2024
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Commits on Feb 1, 2024

  1. Function Test

    @lisaseckler
    lisaseckler committed Feb 1, 2024
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Commits on Feb 2, 2024

  1. Test DD

    @lisaseckler
    lisaseckler committed Feb 2, 2024
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  2. test change

    @lisaseckler
    lisaseckler committed Feb 2, 2024
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Commits on Mar 1, 2024

  1. Delete matRad_Beam2DirtyDose.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  2. Delete matRad_DoseComparison.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  3. Delete optimization/+DoseObjectives/matRad_LETDirtyDose.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  4. Delete optimization/@matRad_OptimizationProblem/matRad_objectiveFunct… 

    …ion.asv
    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  5. Delete optimization/@matRad_OptimizationProblem/matRad_objectiveGradi… 

    …ent.asv
    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  6. Delete optimization/projections/matRad_DirtyDoseProjection.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  7. Delete optimization/projections/matRad_LETdProjection.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  8. Update matRad_Beam2DirtyDose.m 

    removing all the unnecessary parts
    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  9. Delete matRad_Beam2DirtyDoseMCN_WED.m

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  10. Delete matRad_Beam2mLETDoseMCN.m

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  11. Update matRad_Beam2DirtyDose.m

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  12. Delete matRad_UnderdosingTesting.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  13. Update and rename matRad_UnderdosingTesting.m to matRad_DirtyDoseUnde… 

    …rdosingTesting.m
    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  14. Delete matRad_calcLETmask.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  15. Delete matRad_fluenceOptimization.asv

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  16. Cleaning LET Optimization

    @lisaseckler
    lisaseckler committed Mar 1, 2024
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  17. Merge branch 'dev_varRBErobOpt' of https://github.com/lisaseckler/matRad 

     into dev_varRBErobOpt
    @lisaseckler
    lisaseckler committed Mar 1, 2024
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Commits on Mar 27, 2024

  1. Clean up

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  2. Testing examples and deleting scripts

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  3. renaming file

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  4. changing variable names

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  5. Merge branch 'e0404:dev_varRBErobOpt' into dev_varRBErobOpt

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  6. Merge branch 'dev_varRBErobOpt' of https://github.com/lisaseckler/matRad 

     into dev_varRBErobOpt
    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  7. deleting comments

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  8. deleting dicom

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  9. delete

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    lisaseckler committed Mar 27, 2024
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  10. delete

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  11. delete

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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  12. delete

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    lisaseckler committed Mar 27, 2024
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  13. delete

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    lisaseckler committed Mar 27, 2024
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  14. name

    @lisaseckler
    lisaseckler committed Mar 27, 2024
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Commits on Apr 22, 2024

  1. Examples 

    Amits Commits
    @lisaseckler
    lisaseckler committed Apr 22, 2024
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Commits on May 3, 2024

  1. Description of LETmask

    @lisaseckler
    lisaseckler committed May 3, 2024
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Commits on Jun 28, 2024

  1. Merge branch 'dev' into pr/706 

    # Conflicts:
#	matRad/optimization/+DoseObjectives/matRad_DoseVariance.m
#	matRad/optimization/projections/matRad_DirtyDoseProjection.m
#	matRad/optimization/projections/matRad_LETdProjection.m
#	matRad/optimization/projections/matRad_LETxDoseProjection.m
#	matRad_calcParticleDose.m
#	test/matRad_runTests.m
    @wahln
    wahln committed Jun 28, 2024
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  2. some streamlining of the calculation of dirty dose and the LET masks

    @wahln
    wahln committed Jun 28, 2024
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  3. Merge branch 'dev_varRBErobOpt' into pr/706

    @wahln
    wahln committed Jun 28, 2024
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  4. remove the tempfile

    @wahln
    wahln committed Jun 28, 2024
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  5. Merge branch 'dev_varRBErobOpt' into pr/706

    @wahln
    wahln committed Jun 28, 2024
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