Merge pull request #10072 from akesandgren/20200316153808_new_pr_HPL23

Switch to GCC 9.3.0 for foss/2020a and intel/2020a release
easybuilders · Mar 17, 2020 · af945bd · af945bd
2 parents e59084d + 94f2f32
commit af945bd
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diff --git a/...s/b/Boost/Boost-1.72.0-gompi-2020a-rc3.eb → ...nfigs/b/Boost/Boost-1.72.0-gompi-2020a.eb b/...s/b/Boost/Boost-1.72.0-gompi-2020a-rc3.eb → ...nfigs/b/Boost/Boost-1.72.0-gompi-2020a.eb
@@ -4,7 +4,7 @@ version = '1.72.0'
 homepage = 'https://www.boost.org/'
 description = """Boost provides free peer-reviewed portable C++ source libraries."""
 
-toolchain = {'name': 'gompi', 'version': '2020a-rc3'}
+toolchain = {'name': 'gompi', 'version': '2020a'}
 toolchainopts = {'pic': True, 'usempi': True}
 
 source_urls = ['https://dl.bintray.com/boostorg/release/%(version)s/source/']

diff --git a/...figs/f/FFTW/FFTW-3.3.8-gompi-2020a-rc3.eb → ...yconfigs/f/FFTW/FFTW-3.3.8-gompi-2020a.eb b/...figs/f/FFTW/FFTW-3.3.8-gompi-2020a-rc3.eb → ...yconfigs/f/FFTW/FFTW-3.3.8-gompi-2020a.eb
@@ -5,7 +5,7 @@ homepage = 'http://www.fftw.org'
 description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)
  in one or more dimensions, of arbitrary input size, and of both real and complex data."""
 
-toolchain = {'name': 'gompi', 'version': '2020a-rc3'}
+toolchain = {'name': 'gompi', 'version': '2020a'}
 toolchainopts = {'pic': True}
 
 source_urls = [homepage]

diff --git a/...uild/easyconfigs/f/foss/foss-2020a-rc3.eb → easybuild/easyconfigs/f/foss/foss-2020a.eb b/...uild/easyconfigs/f/foss/foss-2020a-rc3.eb → easybuild/easyconfigs/f/foss/foss-2020a.eb
@@ -1,15 +1,15 @@
 easyblock = 'Toolchain'
 
 name = 'foss'
-version = '2020a-rc3'
+version = '2020a'
 
 homepage = 'https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain'
 description = """GNU Compiler Collection (GCC) based compiler toolchain, including
  OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK."""
 
 toolchain = SYSTEM
 
-local_gccver = '9.2.0'
+local_gccver = '9.3.0'
 
 # toolchain used to build foss dependencies
 local_comp_mpi_tc = ('gompi', version)

diff --git a/...ld/easyconfigs/g/gompi/gompi-2020a-rc3.eb → easybuild/easyconfigs/g/gompi/gompi-2020a.eb b/...ld/easyconfigs/g/gompi/gompi-2020a-rc3.eb → easybuild/easyconfigs/g/gompi/gompi-2020a.eb
@@ -1,15 +1,15 @@
 easyblock = "Toolchain"
 
 name = 'gompi'
-version = '2020a-rc3'
+version = '2020a'
 
 homepage = '(none)'
 description = """GNU Compiler Collection (GCC) based compiler toolchain,
  including OpenMPI for MPI support."""
 
 toolchain = SYSTEM
 
-local_gccver = '9.2.0'
+local_gccver = '9.3.0'
 
 # compiler toolchain dependencies
 dependencies = [

diff --git a/...syconfigs/h/HPL/HPL-2.3-foss-2020a-rc3.eb → ...d/easyconfigs/h/HPL/HPL-2.3-foss-2020a.eb b/...syconfigs/h/HPL/HPL-2.3-foss-2020a-rc3.eb → ...d/easyconfigs/h/HPL/HPL-2.3-foss-2020a.eb
@@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s
  arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available
  implementation of the High Performance Computing Linpack Benchmark."""
 
-toolchain = {'name': 'foss', 'version': '2020a-rc3'}
+toolchain = {'name': 'foss', 'version': '2020a'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://www.netlib.org/benchmark/%(namelower)s']

diff --git a/...yconfigs/h/HPL/HPL-2.3-intel-2020a-rc1.eb → .../easyconfigs/h/HPL/HPL-2.3-intel-2020a.eb b/...yconfigs/h/HPL/HPL-2.3-intel-2020a-rc1.eb → .../easyconfigs/h/HPL/HPL-2.3-intel-2020a.eb
@@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s
  arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available
  implementation of the High Performance Computing Linpack Benchmark."""
 
-toolchain = {'name': 'intel', 'version': '2020a-rc1'}
+toolchain = {'name': 'intel', 'version': '2020a'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://www.netlib.org/benchmark/%(namelower)s']

diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2020.0.166.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2020.0.166.eb
@@ -17,11 +17,11 @@ checksums = [
     'b7a3d1934e8ffe1712ffb82747332e025355f9f5fbef62349d0c7b4cb7e636a5',
 ]
 
-local_gccver = '9.2.0'
+local_gccver = '9.3.0'
 
 dependencies = [
     ('GCCcore', local_gccver),
-    ('binutils', '2.32', '', ('GCCcore', local_gccver)),
+    ('binutils', '2.34', '', ('GCCcore', local_gccver)),
 ]
 
 # list of regex for components to install

diff --git a/...ld/easyconfigs/i/iimpi/iimpi-2020a-rc1.eb → easybuild/easyconfigs/i/iimpi/iimpi-2020a.eb b/...ld/easyconfigs/i/iimpi/iimpi-2020a-rc1.eb → easybuild/easyconfigs/i/iimpi/iimpi-2020a.eb
@@ -2,7 +2,7 @@
 easyblock = 'Toolchain'
 
 name = 'iimpi'
-version = '2020a-rc1'
+version = '2020a'
 
 homepage = 'https://software.intel.com/parallel-studio-xe'
 description = """Intel C/C++ and Fortran compilers, alongside Intel MPI."""

diff --git a/...i/imkl/imkl-2020.0.166-iimpi-2020a-rc1.eb → ...igs/i/imkl/imkl-2020.0.166-iimpi-2020a.eb b/...i/imkl/imkl-2020.0.166-iimpi-2020a-rc1.eb → ...igs/i/imkl/imkl-2020.0.166-iimpi-2020a.eb
@@ -9,7 +9,7 @@ description = """Intel Math Kernel Library is a library of highly optimized,
  applications that require maximum performance. Core math functions include
  BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more."""
 
-toolchain = {'name': 'iimpi', 'version': '2020a-rc1'}
+toolchain = {'name': 'iimpi', 'version': '2020a'}
 
 source_urls = ['https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/16232/']
 sources = ['l_mkl_%(version)s.tgz']

diff --git a/easybuild/easyconfigs/i/impi/impi-2019.6.166-iccifort-2020.0.166.eb b/easybuild/easyconfigs/i/impi/impi-2019.6.166-iccifort-2020.0.166.eb
@@ -0,0 +1,22 @@
+# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild
+
+name = 'impi'
+version = '2019.6.166'
+
+homepage = 'https://software.intel.com/en-us/intel-mpi-library/'
+description = "Intel MPI Library, compatible with MPICH ABI"
+
+toolchain = {'name': 'iccifort', 'version': '2020.0.166'}
+
+source_urls = ['https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/16120/']
+sources = ['l_mpi_%(version)s.tgz']
+checksums = ['119be69f1117c93a9e5e9b8b4643918e55d2a55a78ad9567f77d16cdaf18cd6e']
+
+dontcreateinstalldir = True
+
+components = ['intel-mpi', 'intel-psxe', 'intel-imb']
+
+# set up all the mpi commands to default to intel compilers
+# set_mpi_wrappers_all = True
+
+moduleclass = 'mpi'
diff --git a/...ld/easyconfigs/i/intel/intel-2020a-rc1.eb → easybuild/easyconfigs/i/intel/intel-2020a.eb b/...ld/easyconfigs/i/intel/intel-2020a-rc1.eb → easybuild/easyconfigs/i/intel/intel-2020a.eb
@@ -1,18 +1,18 @@
 easyblock = 'Toolchain'
 
 name = 'intel'
-version = '2020a-rc1'
+version = '2020a'
 
 homepage = 'https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain'
 description = "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL)."
 
 toolchain = SYSTEM
 
 local_compver = '2020.0.166'
-local_gccver = '9.2.0'
+local_gccver = '9.3.0'
 dependencies = [
     ('GCCcore', local_gccver),
-    ('binutils', '2.32', '-GCCcore-%s' % local_gccver),
+    ('binutils', '2.34', '', ('GCCcore', local_gccver)),
     ('iccifort', local_compver),
     ('impi', '2019.6.166', '', ('iccifort', local_compver)),
     ('imkl', local_compver, '', ('iimpi', version)),

diff --git a/...tworkx-2.4-foss-2020a-rc3-Python-3.8.2.eb → ...x/networkx-2.4-foss-2020a-Python-3.8.2.eb b/...tworkx-2.4-foss-2020a-rc3-Python-3.8.2.eb → ...x/networkx-2.4-foss-2020a-Python-3.8.2.eb
@@ -8,7 +8,7 @@ homepage = 'https://pypi.python.org/pypi/networkx'
 description = """NetworkX is a Python package for the creation, manipulation,
 and study of the structure, dynamics, and functions of complex networks."""
 
-toolchain = {'name': 'foss', 'version': '2020a-rc3'}
+toolchain = {'name': 'foss', 'version': '2020a'}
 
 source_urls = [PYPI_SOURCE]
 sources = [SOURCE_TAR_GZ]

diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.3.8-GCC-9.3.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.3.8-GCC-9.3.0.eb
@@ -0,0 +1,30 @@
+name = 'OpenBLAS'
+version = '0.3.8'
+
+homepage = 'https://xianyi.github.com/OpenBLAS/'
+description = "OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version."
+
+toolchain = {'name': 'GCC', 'version': '9.3.0'}
+
+source_urls = [
+    # order matters, trying to download the large.tgz/timing.tgz LAPACK tarballs from GitHub causes trouble
+    'https://www.netlib.org/lapack/timing/',
+    'https://github.com/xianyi/OpenBLAS/archive/',
+]
+sources = ['v%(version)s.tar.gz']
+patches = [
+    ('large.tgz', '.'),
+    ('timing.tgz', '.'),
+    'OpenBLAS-0.3.8_fix-dscal-inline-asm.patch',
+]
+checksums = [
+    '8f86ade36f0dbed9ac90eb62575137388359d97d8f93093b38abe166ad7ef3a8',  # v0.3.8.tar.gz
+    'f328d88b7fa97722f271d7d0cfea1c220e0f8e5ed5ff01d8ef1eb51d6f4243a1',  # large.tgz
+    '999c65f8ea8bd4eac7f1c7f3463d4946917afd20a997807300fe35d70122f3af',  # timing.tgz
+    '2e494213e6785187ab1286cda8538452f9fa897ae5110159e3bb441239f84424',  # OpenBLAS-0.3.8_fix-dscal-inline-asm.patch
+]
+
+# extensive testing can be enabled by uncommenting the line below
+# runtest = 'PATH=.:$PATH lapack-timing'
+
+moduleclass = 'numlib'
diff --git a/...LAPACK/ScaLAPACK-2.1.0-gompi-2020a-rc3.eb → .../ScaLAPACK/ScaLAPACK-2.1.0-gompi-2020a.eb b/...LAPACK/ScaLAPACK-2.1.0-gompi-2020a-rc3.eb → .../ScaLAPACK/ScaLAPACK-2.1.0-gompi-2020a.eb
@@ -5,7 +5,7 @@ homepage = 'https://www.netlib.org/scalapack/'
 description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines
  redesigned for distributed memory MIMD parallel computers."""
 
-toolchain = {'name': 'gompi', 'version': '2020a-rc3'}
+toolchain = {'name': 'gompi', 'version': '2020a'}
 toolchainopts = {'pic': True}
 
 source_urls = [homepage]

diff --git a/...le-2020.02-foss-2020a-rc3-Python-3.8.2.eb → ...bundle-2020.02-foss-2020a-Python-3.8.2.eb b/...le-2020.02-foss-2020a-rc3-Python-3.8.2.eb → ...bundle-2020.02-foss-2020a-Python-3.8.2.eb
@@ -7,7 +7,7 @@ versionsuffix = '-Python-3.8.2'
 homepage = 'https://python.org/'
 description = "Bundle of Python packages for scientific software"
 
-toolchain = {'name': 'foss', 'version': '2020a-rc3'}
+toolchain = {'name': 'foss', 'version': '2020a'}
 toolchainopts = {'pic': True, 'lowopt': True}
 
 dependencies = [
@@ -28,7 +28,7 @@ exts_list = [
     ('scipy', '1.4.1', {
         'patches': ['scipy-1.4.1-fix-pthread.patch'],
         'checksums': [
-            'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59',
+            'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59',  # scipy-1.4.1.tar.gz
             '4e2162a93caddce63a1aa2dfb6c181774a4f6615950e1d60c54bb4308fee3bb3',  # scipy-1.4.1-fix-pthread.patch
         ],
     }),
@@ -41,6 +41,9 @@ exts_list = [
     ('mpmath', '1.1.0', {
         'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
     }),
+    ('deap', '1.3.1', {
+        'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
+    }),
 ]
 
 sanity_pip_check = True

diff --git a/...ild-0.10.0-foss-2020a-rc3-Python-3.8.2.eb → ...t-build-0.10.0-foss-2020a-Python-3.8.2.eb b/...ild-0.10.0-foss-2020a-rc3-Python-3.8.2.eb → ...t-build-0.10.0-foss-2020a-Python-3.8.2.eb
@@ -8,7 +8,7 @@ homepage = 'https://scikit-build.readthedocs.io/en/latest'
 description = """Scikit-Build, or skbuild, is an improved build system generator
 for CPython C/C++/Fortran/Cython extensions."""
 
-toolchain = {'name': 'foss', 'version': '2020a-rc3'}
+toolchain = {'name': 'foss', 'version': '2020a'}
 
 source_urls = [PYPI_SOURCE]
 sources = [SOURCE_TAR_GZ]