{bio}[foss/2020a] MetaPhlAn v3.0.9 w/ Python 3.8.2

[manifestoso]

(created using eb --new-pr)

[manifestoso]

Build success dep on #12913, #12915 #12916

[manifestoso]

@branfosj can we rebuild this one. Thx

[branfosj]

@branfosj can we rebuild this one. Thx

Can you run eb --sync-pr 12917, which will update the branch in this PR with the dependencies that have now been merged.

[manifestoso]

@branfosj can we rebuild this one. Thx

Can you run eb --sync-pr 12917, which will update the branch in this PR with the dependencies that have now been merged.

No worries, done. Thx

[verdurin]

@robqiao could you address the test failures and see if it can use the slightly order version of MAFFT?

[manifestoso]

@robqiao could you address the test failures and see if it can use the slightly order version of MAFFT?

@verdurin @branfosj No worries, fixed now.

[boegel]

Test report by @boegel
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
node2617.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/b833b817999a3bf277106df397ea1821 for a full test report.

[boegel]

@robqiao pip check fails in sanity check because several dependencies are missing? See test report...

[manifestoso]

deps on #14326

[manifestoso]

@verdurin @smoors @lexming proofread this PR?

[manifestoso]

deps on PR #14562

[manifestoso]

deps on #14326

[manifestoso]

Test report by @robqiao
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
hpc-head01 - Linux UNKNOWN UNKNOWN, x86_64, Intel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz, Python 3.9.6
See https://gist.github.com/1c6988178874c312b58c523c517cd117 for a full test report.

[lexming]

@boegelbot: please test @ generoso

[boegelbot]

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=12917 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_12917 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 7512

Test results coming soon (I hope)...

- notification for comment with ID 997086048 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/00db40d385cd79ce30c52a10c2bf2340 for a full test report.

[lexming]

Test report by @lexming
SUCCESS
Build succeeded for 4 out of 4 (1 easyconfigs in total)
node301.hydra.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, Python 2.7.5
See https://gist.github.com/8042807adb2b0677c2fb854e33271d59 for a full test report.

[lexming]

@boegelbot: please test @ generoso

[boegelbot]

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=12917 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_12917 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 7513

Test results coming soon (I hope)...

- notification for comment with ID 997090778 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/852a747db293c058dd395742afe3be9b for a full test report.

[lexming]

Thanks for the update @manifestoso . I just made a little fix to the sanity checks, as long as you already check for files inside bin and lib ther is no need to explicitly check for those folders. In this case, you already check for the executables inside bin and since MetaPhlAn is a Python package we must have a site-packages inside lib.

LGTM

[lexming]

Going in, thanks @manifestoso !