{bio}[goolf-1.4.10] PyMOL and {devel}[goolf-1.4.10] GLEW (REVIEW)

easybuild/easyconfigs/g/GLEW/GLEW-1.10.0-goolf-1.4.10.eb

@@ -0,0 +1,46 @@
+# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
+# Author: Pablo Escobar Lopez
+# Swiss Institute of Bioinformatics
+# Biozentrum - University of Basel
+
+name = 'GLEW'
+version = '1.10.0'
+
+homepage = 'http://glew.sourceforge.net/index.html'
+description = """ The OpenGL Extension Wrangler Library (GLEW) is a cross-platform 
+ open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms 
+ for determining which OpenGL extensions are supported on the target platform. OpenGL core 
+ and extension functionality is exposed in a single header file. GLEW has been tested on 
+ a variety of operating systems, including Windows, Linux, Mac OS X, FreeBSD, Irix, and Solaris. """
+
+toolchain = {'name': 'goolf', 'version': '1.4.10'}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TGZ]
+
+# this is not standard " configure && make && make install" so let's tweak it
+skipsteps = ['configure', 'install']
+
+# we setup as env vars the system to compile and the install dir
+prebuildopts = 'SYSTEM=linux && export GLEW_DEST=%(installdir)s && '
+
+# and we do "make all && make install.all"
+buildopts = 'all && make install.all'
+
+python = 'Python'
+pythonversion = '2.7.5'
+
+versionsuffix = '-%s-%s' % (python, pythonversion)
+
+dependencies = [
+    ('freeglut', '2.8.1'),
+    ('libXi', '1.7.2'),
+    ('Mesa', '7.11.2', '-%s-%s' % (python, versionsuffix)),
+]
+
+sanity_check_paths = {
+    'files': ["bin/glewinfo", "include/GL/glew.h", "lib64/libGLEW.so", "lib64/libGLEW.a"],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.4.10-Python-2.7.5.eb

@@ -0,0 +1,26 @@
+name = 'libxml2'
+version = '2.9.1'
+
+homepage = 'http://xmlsoft.org/'
+description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable
+outside of the Gnome platform)."""
+toolchain = {'name': 'goolf', 'version': '1.4.10'}
+
+source_urls = [
+    'http://xmlsoft.org/sources/',
+    'http://xmlsoft.org/sources/old/'
+]
+sources = [SOURCELOWER_TAR_GZ]
+
+configopts = 'CC="$CC" CXX="$CXX" --with-pic'
+
+pythonver = '2.7.5'
+pythonshortver = '.'.join(pythonver.split('.')[0:2])
+versionsuffix = '-%s-%s' % ('Python', pythonver)
+
+dependencies = [
+    ('zlib', '1.2.8'),
+    ('Python', pythonver),
+]
+
+moduleclass = 'lib'

easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.5.eb

@@ -0,0 +1,56 @@
+easyblock = 'ConfigureMake'
+
+name = 'Mesa'
+version = '7.11.2'
+
+homepage = 'http://www.mesa3d.org/'
+description = """Mesa is an open-source implementation of the OpenGL specification -
+a system for rendering interactive 3D graphics."""
+toolchain = {'name': 'goolf', 'version': '1.4.10'}
+toolchainopts = {'optarch': True}
+
+sources = ['%sLib-%s.tar.gz' % (name, version)]
+source_urls = [
+    'ftp://ftp.freedesktop.org/pub/mesa/%(version)s',
+    'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s',
+]
+
+pythonver = '2.7.5'
+pythonshortver = '.'.join(pythonver.split('.')[0:2])
+versionsuffix = '-%s-%s' % ('Python', pythonver)
+
+dependencies = [
+        ('flex', '2.5.35'),
+        ('Bison', '2.5'),
+        ('makedepend', '1.0.4'),
+        ('Python', pythonver),
+        ('libxml2', '2.9.1', versionsuffix),
+        ('glproto', '1.4.16'),
+        ('libdrm', '2.4.27')
+        ]
+
+osdependencies = [
+            'libX11-devel',  # Xlibs.h
+            'xorg-x11-proto-devel',  # X.h, glproto, xproto
+            'libXdamage-devel', 
+            'libXext-devel', 
+            'libXfixes-devel',
+        ]
+
+configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib"
+configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl"""
+
+# package-config files for os dependencies are in an os specific place
+preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" '
+
+prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" '
+
+sanity_check_paths = { 
+    'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h',
+              'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h',
+              'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h',
+              'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'],
+    'dirs': [],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/p/PyMOL/PyMOL-1.7.2.1-goolf-1.4.10-Python-2.7.5.eb

@@ -0,0 +1,38 @@
+# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
+# Author: Pablo Escobar Lopez, Adam Mazur
+# Swiss Institute of Bioinformatics, Research IT
+# Biozentrum - University of Basel
+
+name = 'PyMOL'
+version = '1.7.2.1'
+
+easyblock = "PythonPackage"
+
+homepage = 'http://www.pymol.org/pymol'
+description = """ PyMOL is a powerful and comprehensive molecular visualization 
+ product for rendering and animating 3D molecular structures"""
+
+toolchain = {'name': 'goolf', 'version': '1.4.10'}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = ['%(namelower)s-v%(version)s.tar.bz2']
+
+python = "Python"
+pythonversion = "2.7.5"
+pythonshortversion = '.'.join(pythonversion.split('.')[:-1])
+
+versionsuffix = "-%s-%s" % (python, pythonversion)
+
+dependencies = [
+    (python, pythonversion),
+    ('Pmw', '1.3.3', versionsuffix),
+    ('Mesa', '7.11.2', versionsuffix),
+    ('GLEW', '1.10.0'),
+]
+
+sanity_check_paths = {
+    'files': ['bin/pymol'],
+    'dirs': ['lib/python%s/site-packages/pymol' % pythonshortversion],
+}
+
+moduleclass = 'bio'