{data}[foss/2020b] nnU-Net v1.7.0 (+ dependencies)

[deniskristak]

adding easyconfigs: tifffile-2021.8.30-foss-2020b.eb, unittest2-1.1.0-foss-2020b.eb, SimpleITK-2.1.0-foss-2020b.eb, requests-2.26.0-foss-2020b.eb, batchgenerators-0.23-foss-2020b.eb, Lua-5.3.5-GCCcore-10.2.0.eb

edit (by @boegel): requires #14246 (dependencies for imagecodecs) + #14247 (imagecodecs)

[Micket]

A general comment; having to many paths can be a performance problem, so, we often opt to bundle simple things like requests into the stuff that needs it rather than having another package with another PYTHONPATH. unittest2, requests, comes to mind here. I'm not saying we have to do this here, but, we need to keep this in mind, because if we never do it, it becomes an increasing problem

[Micket]

Is the slight downgrade to 5.3.5 from 5.4.2 necessary?

[deniskristak]

actually yes...when installing with 5.4, we're getting Lua version 5.3 is required for SimpleITK_LUA_EXECUTABLE_VERSION.

[deniskristak]

@Micket i think this EC and it's deps are ready to be merged (merge this one last):

#14247 -> second to merge
#14246 -> first to merge

requested changes made

[boegel]

@boegelbot please test @ generoso
CORE_CNT=16

[boegelbot]

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=14249 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14249 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 7251

Test results coming soon (I hope)...

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[boegel]

lgtm

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
cnx2 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/06953747e71f83fc098ff8bff8269b3d for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3103.skitty.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/d3dbeb8a3c53ab81a0f3257dd2ceec9e for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3518.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/cd3500322b3f291b309175400e34239e for a full test report.

[boegel]

Going in, thanks @deniskristak!