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{bio,tools}[foss/2023b] arrow-R v16.1.0, R-bundle-Bioconductor v3.19 w/ R 4.4.1 #20913
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{bio,tools}[foss/2023b] arrow-R v16.1.0, R-bundle-Bioconductor v3.19 w/ R 4.4.1 #20913
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…oconductor-3.19-foss-2023b-R-4.4.1.eb
@branfosj Note that this seems to be based on https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/a/arrow-R/arrow-R-14.0.1-foss-2023a-R-4.3.2.eb, where I used the full Arrow source tarball instead of the CRAN tarball. This was because we needed a specific version that was not available on CRAN, see: #20324. Other/older versions do use the CRAN releases, e.g. https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/a/arrow-R/arrow-R-11.0.0.3-foss-2022b-R-4.2.2.eb. I'm not sure what we should prefer and if it really matters, from what I remember the CRAN tarballs just contain the R interface and some files differ a bit, mostly in style-related things. This version is available on CRAN, so perhaps we could/should stick to that one again? |
Changed in 40baa44 |
Code I used to check for duplicate extensions between the easyconfigs: from easybuild.framework.easyconfig.easyconfig import EasyConfig
from easybuild.tools.options import set_up_configuration
set_up_configuration(reconfigure=True)
r = EasyConfig('R-4.4.1-gfbf-2023b.eb', validate=False)
r_cran = EasyConfig('R-bundle-CRAN-2024.06-foss-2023b.eb', validate=False)
r_bio = EasyConfig('R-bundle-Bioconductor-3.19-foss-2023b-R-4.4.1.eb', validate=False)
r_exts = []
r_cran_exts = []
r_bio_exts = []
for ext in r['exts_list']:
if isinstance(ext, tuple):
r_exts.append(ext[0])
for ext in r_cran['exts_list']:
if isinstance(ext, tuple):
r_cran_exts.append(ext[0])
for ext in r_bio['exts_list']:
if isinstance(ext, tuple):
r_bio_exts.append(ext[0])
list(set(r_exts) & set(r_cran_exts))
list(set(r_exts) & set(r_bio_exts))
list(set(r_bio_exts) & set(r_cran_exts)) |
Test report by @branfosj |
@boegelbot please test @ generoso |
@branfosj: Request for testing this PR well received on login1 PR test command '
Test results coming soon (I hope)... - notification for comment with ID 2195662632 processed Message to humans: this is just bookkeeping information for me, |
Test report by @boegelbot |
(created using
eb --new-pr
)