{bio}[foss/2018b] PHANOTATE v20190724

[pescobar]

(created using eb --new-pr)

edit (by @boegel): requires fix from easybuilders/easybuild-framework#3537

[pescobar]

when downloading a git repo the checksum doesn't work but travis still complains. how should I proceed?

[boegel]

Hmm, the installation of this is broken, because the current master of the PHANOTATE repo doesn't have submodules anymore.

So, the initial clone with git clone --recursive doesn't create a fastpath directory, and the subsequent git checkout cc42101 just leaves an empty fastpath directory.

The subsequent git submodule update doesn't do much, it seems like that should be git submodule update --init to ensure the submodule gets initialized first (so that needs to be fixed in framework).

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3501.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/664b5427f616efb58c8e2cc7ac807639 for a full test report.

[boegel]

@boegelbot please test @ generoso

[boegelbot]

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=8667 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_8667 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 12355

Test results coming soon (I hope)...

- notification for comment with ID 753591671 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/a4eafe7cfcdaf96627078aeafe44efb1 for a full test report.

[boegel]

lgtm

[boegel]

Going in, thanks @pescobar!

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node2631.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/4d0e52f3645685194b8e5bd05c9b83d5 for a full test report.